Pungitius pungitius (ninespine stickleback): 119194699
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Entry
119194699 CDS
T07626
Symbol
prpf39
Name
(RefSeq) pre-mRNA-processing factor 39 isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ppug03041
]
119194699 (prpf39)
Spliceosome [BR:
ppug03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
119194699 (prpf39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_19
TPR_MalT
TPR_16
Focal_AT
TPR_10
Motif
Other DBs
NCBI-GeneID:
119194699
NCBI-ProteinID:
XP_037304889
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All DBs
Position
20:2627174..2634102
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AA seq
790 aa
AA seq
DB search
MEDAELQLSDAPITEMLDTESPAMESNGDAFLPDLPVIGQTADWSPDQVAPEPLTNILPE
DSDASQDAPLQLQQQQQQSPNEQMSSPELGSVEKAVEQFQIASAQLFQVEQPPPPPLPAE
EEEPPQPPAEHVPEPVEPEPEGQEMTVAPEPTDGTEVQQMTEDGMELEEPAREATEEAVA
LEPSEFEKLFKQCEDNPEDFNGWVYLLQFVEQENYLPAVRSAFDAFFLHYPYCYGYWKKY
ADIEKKHENIQVAEEVYRRGLQAIPLSVDLWLHYLTYIKENSDLSDPETEGRIRAAHEHA
VLAAGTDFRSDRLWESYISWETEQEKLANVTAIYDRVLGIPTQLYSQHFQRFKDHVQNNN
PKHFLSEEEFVQLRLELSKASLLAMIGEVEETPIASEDLPPGMDDLVDPAKRVTEIENMR
HKVIEVRQEVFNHNEHEVSKRWAFEEGIKRPYFHVKSLEKTQLNNWKEYLDFEIENGIPE
RVVVLFERCLIACALYEEFWTKYAKYLEGYSIDGVRHVYKKACSTHLPRKPAIHLLWAAF
EEQQGNVEEARGILKSLEEVVPGLAMVRLRRVSLERRHGNLEGAEALLREAMESAKNVTE
TSFYAVKLARQMMKVQRSLSKARKVLLDAIERDQTSPKLFLNLLELEYSGDVTQNEAEIL
ACFDRALQSQMPLESRLLFCQRKVEFLEDFGSDINVLVAAYEENEKLQKESESSKRKAEN
GYDSSQEPDAKRLRMEDGTMGDVSAATDPNASNSAYNSWYQQQYGGWGQNSWGQYNQYAQ
YNQYYPPPPT
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atggaagacgcggaactacaactttcagacgcccccatcactgaaatgctggacactgag
tcccctgccatggagagcaatggggatgcctttcttcctgaccttcctgttataggccaa
actgctgactggtcccctgaccaggttgctccagaaccactcacgaatatcttacccgag
gactctgatgcgtcccaggatgctccactacaactacaacaacaacaacaacaatcccca
aacgagcaaatgagttccccggagctgggatctgtggagaaggccgtggaacagtttcag
attgccagtgcccagctcttccaagttgaacagccaccacctccaccactgcccgcggaa
gaggaagagccgccgcagccgccagcagaacacgtaccggagcctgtagaacctgagcca
gaaggccaggagatgaccgttgcgccagaaccaacagatggcactgaggttcagcagatg
acagaggatgggatggaactcgaagaaccagccagggaggcaacagaagaagctgttgct
ttggagccaagtgagtttgaaaaactcttcaaacaatgtgaggataacccagaagacttc
aatggctgggtctacttgctgcagtttgtggagcaagagaattatcttccagctgtgaga
agcgcatttgatgctttcttcctacattatccgtattgctatggctactggaagaagtac
gctgacattgagaaaaagcatgagaatatacaggttgcggaagaggtatacagaagaggc
ttacaggctatccctctcagtgtggatctgtggctgcattacctgacctacatcaaagag
aactctgacctgagtgacccagagaccgaggggcgcatcagagctgcccatgaacatgca
gtgctcgcagcaggcacagactttcgctcagaccgtctttgggagtcctacatcagctgg
gagacggagcaggagaagctggctaatgttaccgccatctatgaccgcgtcctgggcatc
ccaacccagctgtattcccagcacttccagagattcaaagatcacgtgcagaacaacaac
cccaagcacttcctgtcagaagaggagtttgtgcagctgcggctcgagctctccaaagcc
agcctattggcgatgattggcgaggttgaggagacgcccattgcctctgaggacttgccg
ccgggcatggatgatctcgtggatcctgcaaagagagtgactgagatcgagaacatgcgc
cacaaggtgatcgaggttcggcaggaagtgttcaaccacaacgaacacgaagtcagcaag
cgctgggcctttgaagaggggataaaaagaccatacttccacgtgaaatccttggagaag
acccagctgaacaactggaaggagtacttggactttgaaattgaaaacgggatccctgag
cgcgtggtcgttctctttgaacgatgcctcatcgcttgtgctctctacgaggagttctgg
acaaagtatgcaaaatatctagaaggctacagcattgatggtgttcgacatgtctacaag
aaggcctgctccacccatttgcccaggaagccagccatccatctgctgtgggccgctttc
gaggagcagcaaggtaatgtggaggaggcccgtggcatcctgaagtcgctggaggaagtg
gtcccgggtctggccatggttcgtcttcggagggtcagtcttgagcgtcgtcatgggaac
ttggagggggcggaggccctgttgagggaggccatggagtccgcgaagaacgtcacggag
acatcgttctatgctgtgaagctggccaggcagatgatgaaggtgcagagaagtctgagc
aaggcccggaaagtgctgctggatgccatcgagagagaccagacaagtccgaagctcttt
cttaacctgcttgagctggagtacagtggggatgtgacgcagaacgaggcggagatcttg
gcctgtttcgaccgagccttgcagagccagatgccccttgagtcgcgcctcctcttctgc
cagcgcaaggttgagttcctcgaggactttggcagtgacatcaatgtgcttgtggctgca
tacgaggaaaacgaaaagctacagaaagaaagcgaatcctcaaagaggaaggccgagaac
gggtatgacagctcccaggagcctgatgccaagaggctgcgtatggaggacggtactatg
ggagacgtctccgcggcgacggacccaaacgcgagcaactctgcatacaacagctggtac
cagcagcaatatggcggttggggacaaaactcctggggacagtacaaccagtatgcccag
tacaaccagtactaccctcctcccccaacatga
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