Pungitius pungitius (ninespine stickleback): 119194711
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Entry
119194711 CDS
T07626
Symbol
ddx1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ppug03041
]
119194711 (ddx1)
03016 Transfer RNA biogenesis [BR:
ppug03016
]
119194711 (ddx1)
Enzymes [BR:
ppug01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
119194711 (ddx1)
Spliceosome [BR:
ppug03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
119194711 (ddx1)
Transfer RNA biogenesis [BR:
ppug03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
119194711 (ddx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
SPRY
Helicase_C
ResIII
CMS1
DUF5766
Motif
Other DBs
NCBI-GeneID:
119194711
NCBI-ProteinID:
XP_037304919
LinkDB
All DBs
Position
20:8316144..8321890
Genome browser
AA seq
740 aa
AA seq
DB search
MAAFSEMGVMPEIAQAVEELDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDEQEGKRGRSSIKTGGAIFNNWQMNPYDRSAAFAIGADGLCCQSREFKEWH
GCRSTKGVSKGKYYYEVTCHDQGLCRIGWSTSQAALDLGTDKYGFGFGGTGKKSNNKQFD
SYGEEFTMHDTIGCYLDLDKGQISFSKNGNDLGTAFEIPQNVQSQPFFASCVLKNAELKF
NFGGEDFKNAPKSGFVALVQAPEGHAVKSSQAGSAKVSQAKASSNAPRALILEPSKELAE
QTLNNVKQCGKYVDNPKLRNLLVIGGVPAKDQMAALEQGVDIVVGTPGRLDDLISTGKLS
LSQVRFLVLDECDGLLSAGYTDFINRIHKQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE
RIMHFPTWVDLKGEDSVPESVHHVVVPVNPKNDRLWERLAKNHIRTDEVHAKDNTRPGAN
SAEMWSEAIKLLKGEYTVRAIKEHKMDQAIIFCRTKIDCDNMEQYFIQQGGGPDSKNHQL
SCVCLHGDRKPIERKTNLERFKKKEVRLLVCTDVAARGIDVHGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVAMEKEKVWYHACPNRGRGCYNTRLKEDGGCTIWYNEKELLS
DIEEHLKCTITQCEPDIKVPLDDFDGKVTYGQRKKLGGGNYKGHVDVLAPTVKELAILER
EAQSSFLHLGYMPNQLFRAF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcagcattttctgaaatgggggttatgcccgaaatcgcgcaggctgtggaagagctg
gactggctgctacctactgacattcaggccgagtctattccccttatacttggtggagga
gatgtacttatggcagctgaaactgggagcggtaaaaccggcgccttcagtatccctgtg
atccagattgtgtatgagaccctgaaggatgaacaagaggggaagcggggcagatcctcc
atcaagactggaggagctattttcaacaactggcagatgaatccttatgaccgcagcgct
gccttcgcgatcggtgcagatggtctgtgctgccagagcagggagtttaaagagtggcat
ggctgtcgctctacaaaaggggtctccaaagggaagtactactatgaggtgacttgccat
gatcagggtctgtgtcgcatcggctggtcgaccagtcaggcagctctggacttgggaacc
gataagtatggttttggttttggagggactggaaagaaatccaacaacaagcagtttgac
agctatggagaggagtttaccatgcacgacactattggatgctacctggacctagacaag
ggccagatttccttctctaaaaacgggaacgacctgggtacggcttttgagatccctcaa
aatgtgcagagtcagcccttctttgcctcctgtgtgctcaagaatgcagagctgaagttc
aactttggaggagaagactttaaaaatgcccctaagagtgggtttgttgccttggtacag
gcgccagagggccacgcagtcaaatcttctcaagcaggcagtgccaaagtgagtcaggca
aaggcatcatcaaacgcacctagagcactgatcctggagccatcgaaagaactggccgaa
caaaccctcaacaatgtcaagcagtgtgggaaatatgtagataatcccaaactcaggaac
cttctggtgattggtggcgtccctgccaaagatcagatggctgctctggaacagggggtt
gacattgtggtgggaacccctggaagactggatgaccttatatcaactgggaagctcagt
ctttcccaagtccgctttctagtcctggatgagtgtgacggcttactgtccgcgggctac
acagactttattaacaggatccacaaacaaatccctcaggtcacttctgacggtaaaaga
ctgcaggtgattgtctgttcagccacgctgcattcgtttgacgtgaagaagctgtctgag
cgcatcatgcactttcccacctgggtggacctgaagggcgaggactccgtccctgagagc
gtccaccacgtggtagtgccagtaaatcctaagaacgatcgcctctgggagcgcctcgcc
aagaaccacatccggactgatgaagtccatgccaaagataacaccagacctggagccaac
tctgcagaaatgtggtcggaagccattaagctgctaaagggcgagtacacggttagggcc
atcaaagagcacaagatggaccaggccatcatcttctgccgcaccaagatcgactgtgac
aacatggagcagtacttcattcagcaaggaggaggtccagacagtaaaaaccaccagctc
tcctgtgtctgtctccatggtgatcgaaagccaatcgagagaaagactaacttggagcga
ttcaagaaaaaagaagtgaggctcttggtctgcacagacgtagctgccagaggaattgac
gttcacggggttccttatgtgataaacgtcaccctgccagatgagaagcagaactacgtc
catcgtattggaagagttggacgagcagagagaatgggactggccatctcattggtcgct
atggagaaggagaaggtgtggtaccacgcttgcccaaaccgaggcagaggctgctacaac
actcggctgaaggaggacggaggttgcaccatctggtacaacgagaaagagctcctgtca
gatattgaggagcatctaaaatgcaccatcacccagtgtgagccagacatcaaagtgccc
ctggatgattttgatggaaaggtcacctatggtcagcgcaagaagttgggaggtggtaac
tacaaaggtcacgtggatgttctggccccgacggtcaaagagctggcaatcctcgagaga
gaagcccagtcttccttcctccacctgggttacatgccgaatcagcttttcagagccttc
tga
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