Pungitius pungitius (ninespine stickleback): 119194908
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Entry
119194908 CDS
T07626
Symbol
col10a1b
Name
(RefSeq) collagen alpha-1(X) chain
KO
K19479
collagen type X alpha
Organism
ppug
Pungitius pungitius (ninespine stickleback)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Collagen
C1q
BclA_C
Motif
Other DBs
NCBI-GeneID:
119194908
NCBI-ProteinID:
XP_037305286
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Position
20:5308939..5314494
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AA seq
657 aa
AA seq
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MDLRVTSVLLVLLALAEATREKYYHVPKMTKSAQPVKGQAVVGHPGPPGPPGEPGPMGPY
GPPGKSGVGHTGQQGPPGPPGPPGYSQPGKPGSPGGYGKSGSPGIPGQKGEPGATGPMGA
RGAPGPHGTPGPAGLSSSGKPGPAGYPGAVGQRGEPGLKGHPGVPGLPGSKGDRGIGVSG
AQGAPGGVGPMGPPGMPGKSGAGIPGATGYPGEPGKGGVPGRDGSPGAMGLPGPKGHTGA
PGIGASGKPGQNGSPGMPGPMGSKGPQGPAGQPGSPGMPGVGQTGATGLPGSRGSPGTPG
TTGQKGEPGPTGYTGQTGALGPIGPAGPQGARGFPGEGGPQGSKGDTGMVGAPGPRGTKG
DQGAQGFTGKPGSTGEVGPQGLPGHTGPQGQKGVQGHNGPPGIPGANGAPGLKGHPGPSG
GQGKSGENGRPGSMGPVGPPGPSGPTGAKGHPGFPGPPGPAGITAKGISGPRGPPGTPGP
RGQDGYPGPAGPPGAPGPPGEMVYHNEKSMPMKSHDIGMSHEMVKAPMSAFSAVLTIAYP
QAATPIPFNQVVYNGENHYDAHSGVFTCQVPGLYYFSYHMHVNGANALVALYKNEEPVMF
TYDEYNKGFLDQMSGSTVLMLNAGDRVYIQVPDEDSNGIFAAENVHCAFSGFLIAST
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atggacctacgggtgacaagtgttctcctcgtcctcctagctttggctgaagcgacccgt
gagaagtactaccatgtgccaaaaatgaccaagtctgcccaaccggtgaagggccaagcc
gttgtaggccacccaggtcctccaggtcctccaggtgagccaggaccaatggggccatac
ggacctcctggaaagagtggtgtaggacatactggacaacaaggccctccaggtcctcct
ggaccccctggctactctcaacctggtaaacctggttcaccaggtggctatggaaaatca
ggcagccctggcatccctggtcagaaaggggaacctggcgcaactggaccaatgggtgcc
agaggtgcacctggtccacatggaacacctggacctgctggactttcttcaagtggaaaa
cctggaccagctggctaccctggggcagtgggacaaagaggtgagcctggtttgaaggga
catcctggtgttcccggtcttcctggatccaaaggagacagaggcattggagtttctggg
gctcaaggagcgccaggtggagttggaccaatgggcccacctggaatgcctggcaaatct
ggagctggtatacctggtgcaactggctatcctggagaacctggcaagggtggtgtgcca
ggaagagatggctctcctggggcaatgggtttgccaggaccaaagggtcacacaggcgct
ccaggtattggagcatcagggaaacctggccagaatggtagcccaggtatgcctggacct
atgggttctaaaggtccacaaggtccagctggtcaaccaggctcacctggcatgccaggt
gttggccagacaggtgcaactggactaccaggtagcagaggttcccccggtactccagga
acaactggtcagaaaggagagccaggcccgactggctatactggtcagacaggtgctcta
ggtcctataggcccagctggtccacagggtgcgaggggattcccgggtgagggaggcccc
caaggatccaaaggcgacactggtatggtaggtgcaccaggcccgagaggaaccaagggt
gaccagggtgcccaaggtttcactggaaagccaggttctacaggggaagtaggtccgcaa
ggactcccagggcatactggtcctcaaggccaaaagggtgtacaaggccataatggtccc
ccagggattccaggtgcaaatggtgctcctggactaaaaggacacccaggcccctcagga
ggacaaggaaaaagtggtgagaacggaagaccaggatctatgggaccagtcgggccccct
ggtccatcaggtcccactggggctaagggccatccgggtttcccaggcccacctggccct
gctggcataacagctaagggaatttctggtcctcggggtccccctggaactcccggtccc
agaggtcaagatggttacccaggccctgcaggtcctcctggtgctcctggcccaccaggc
gagatggtctaccacaatgagaagagcatgccaatgaagtcccacgacattgggatgtct
catgaaatggtgaaagcccccatgtccgccttcagtgctgtgctgaccatagcctacccc
caagctgcaacccctattccgttcaaccaggttgtgtacaatggggagaaccactacgat
gcccacagtggtgtgttcacctgccaggtcccaggcctctactatttcagctaccatatg
cacgtcaatggtgccaatgcactagtcgccctctacaaaaacgaggagccagttatgttc
acctatgatgagtacaacaaaggcttcctggatcagatgtcaggcagtactgttcttatg
ttgaatgctggtgacagagtctatatccaggtccccgatgaggacagtaatggtatattt
gcagcagagaatgttcattgcgcattctctgggttcttgattgcctcaacgtga
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