Pungitius pungitius (ninespine stickleback): 119195090
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Entry
119195090 CDS
T07626
Symbol
srsf5b
Name
(RefSeq) serine and arginine rich splicing factor 5b
KO
K12893
serine/arginine-rich splicing factor 4/5/6
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03040
Spliceosome
ppug05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119195090 (srsf5b)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
119195090 (srsf5b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ppug03041
]
119195090 (srsf5b)
Spliceosome [BR:
ppug03041
]
Common components
Common spliceosomal components
SR proteins
119195090 (srsf5b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_3
Nup35_RRM_2
RRM_5
SET_assoc
Motif
Other DBs
NCBI-GeneID:
119195090
NCBI-ProteinID:
XP_037305622
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All DBs
Position
20:12010519..12015634
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AA seq
328 aa
AA seq
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MTSTMSGCRIFIGRLSPSAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDAEDAVYE
LDGKELCSERVTIEHARVRLRGGRGRGGGGGVGGGVGGGGGGAGGRFPDRYGRGSQNSRS
RNPPPMRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASGSDLK
NALDKLHGKEINGRKIKLIEAVKKRSRSRSRSDSSSRSRSRSRGRSVSRSPRRSRSPPHK
PHNRSRSRSRSRSRSRSRSRSRSRSPSRSPVGGSLSPGSKSKEAAKGLSKTSKSATPPPP
PPALRASRSRSRSRSRSHSRSPSTDSQR
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
atgacatcaacaatgagcgggtgtcgtattttcatcggccggctgagtccctccgccaga
gagaaggacgtggagagattcttcaaaggatacggccgcatccgagacatcgacctcaag
agaggcttcggctttgtggagtttgaggatcccagagacgctgaagatgctgtttatgag
cttgatggcaaagagctgtgcagcgaaagggtcactattgagcacgcccgcgtacgtctg
cgtggcggtcgtggcagaggaggtggaggtggagttggaggcggagtcggaggtggaggt
ggaggtgcaggaggacgtttcccggatcgatatggccgcggctcccagaacagtcggagc
cgaaaccctcctccgatgcgcactgagaaccgcctgatcgtagagaatttgtcctctcga
gtcagctggcaggacctgaaagatttcatgagacaagctggagaggtgacatttgcagac
gcacatcggcccaagctcaacgaaggggtcgttgagtttgcttctggcagcgatctaaaa
aatgccctggacaaattgcatggaaaggaaatcaatggcaggaaaatcaagctcattgag
gcagtcaagaagaggtcgagaagtcgctcccgctccgacagctcctctcgctcacggtcc
cgctctcgcggccgctccgtgtcccgctccccgaggcgttcccgaagccccccccacaag
ccccacaaccgctcccgctctcgctcccgatcccgctcccgctcccgctctcgctcccgc
tcccgctcccgctcccccagcaggtccccggtcggcggctcgttgtctccgggctccaag
tccaaggaggccgccaaagggttgtccaagaccagcaagtccgccaccccgccgcccccc
ccgcccgccctcagggcctcccggtcccgctctcgttcccgctcccgctcccactctcgc
tccccttctaccgacagccagcgctaa
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