Pungitius pungitius (ninespine stickleback): 119195123
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Entry
119195123 CDS
T07626
Symbol
afdna
Name
(RefSeq) afadin isoform X1
KO
K05702
afadin
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug04517
IgSF CAM signaling
ppug04520
Adherens junction
ppug04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
119195123 (afdna)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
119195123 (afdna)
04530 Tight junction
119195123 (afdna)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RA
DIL
PDZ
FHA
PDZ_6
RA_2
PDZ_2
RA_3
Yop-YscD_cpl
RASSF8-10_RA
Motif
Other DBs
NCBI-GeneID:
119195123
NCBI-ProteinID:
XP_037305687
LinkDB
All DBs
Position
20:complement(5635644..5703857)
Genome browser
AA seq
1978 aa
AA seq
DB search
MQQFRRTERGSDQPSTMSGSREEERRKLADIINHWNANRLDLFEISRPTEDLEFHGVMRF
YFQDRVAGNFATKCIRVSSTATTQDVIETLAEKFRPDMRMLSSPKYSLYEVHVSGEERQL
DLDEKPLVVQLNWNKDDREGRFVLKNENDILPKKSQSNGPEKEKDGVIQNFKRTLSKKEK
KKEKKREKEFARIPDGDEHTLTREDGENSRLAAEVYKDMPETSFTRTISNPEVVMKRRRQ
QKLEKRMQEFMSGDGRPDSGGTLRIYADSLKPNIPYKTILLSTRDTADFAVGEALEKYGL
EKENPREYCIARQEDKSSKEVILDDAECPLQIFRDWPADRGALVFQLKKRPPDYQGRKGR
KVDDKGLRGSSSTSSLPPEKLPYLVELSPGRGNHYAYYAYRHHEDGSDSRDKPKLYRLQH
SITEVGSDCTEDGAIQLLGPGILPHHCDLMHSEGMVTVTPSGPDADTFVDGQRLNETAVL
RSGSTLQFGSVHVFKFVDPMFDQGGKREPAAMMRSRHKSGSVPETTFDLQGDLHSGAPLP
TSKSSGEMERGMVKPMMRGEQQDNRSQDTSVDRTELILPAGIEFRDNSEDTFLSAIINYT
NSSTVHFKLSPTYVLYMACRYILSPSYRPDISPSERTHKVIAIVNKMVSMMEGVIQGIPE
GDQKQKNIAGALAFWMANASELLNFVKQDRDLSRVTLDAQDVLAHLVQMAFKYLVHCLQA
DLNNYMPAFLDDPEEHNPQRPKIEDVLHTLTGAMSLLRRCRVNAALTIQLFSQLFHFINM
WLFNKLVTDTDSGLCCHYWGAILRQQLSHIEAWAEKQGLELAADCHLSRIVQATTLLTMD
KYSMQDVQNIHNTCFKLNSLQLHALMTNYHCAPDEPYIPPELIDHVVAVAENTADELARS
DGREVQLEEDPDLQLPFLLPEDGYSCDVVRSLPNGLQDFLEPLLQRGFCRLVPHPRSPGT
WTVHFEGANCDSHFSAADSSEMPMRKDPEVVTVTLKKHNGMGLSIVAAKGAGQEKLGIYV
KSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTGSVVTLEVAKQGAIYH
GLATLLNQPSPLMQRAADRGRDKNGKLRPKSEGFELYNNSVQNGSPESPQGGWDSYPEPK
KMSGDDRLFKNRADHRSSPNVANQGQSPAGKAVYPGGPGTKITSVSTGNLCADDEPSPPR
PEAYPIPTQTYPREYFTIPASKSQDRVVVVPGQGPSQHWQGVEDREHLPVVDNLHNNNNS
SMQRINHSQEELYPPPVGLRPDERMQPHYQQDYQPRDLDYQHRDLDYPRGPAGGVGGPDH
WAPQPQVSSSVESSTSSQEHLNFSASSSSSNKTTNQKTGPGRWKTPNAPHAAPQHAAQTP
SRSDLPPPPPPPPAAYPDAYDAYEPQPELPLPPPPAALNAVAAQQAADRKKREEQQRWYE
KEKARLEEERWGERKRREQERKLGQIRANPVMPVQPHNNGGSMPPPHHQPPLPSVAPPQP
YLPPQPQPQPPPSRPEKLSSLPRSAVPPPASASNPGMDTVIRDLLPQQQPRTIERRDLQY
ITISKDDPTSSDSLSPDPWKRDAREKAEKQQQLHIVDLLDKEIQELQSKPERTAEESDRL
RKLMLEWQFQKRLQESKHSDDDEEEDDDEDVDTMMIMQRLEAEKRARQQNAVPAISVLDL
LQDEERRRKQQLEEIRKREAEERAKQEEERRWRDESGDKRRQEEVYYTRLEAERRRQHEE
AERKLLTPDEPAGLYRPPLPRDYQPPAPTNPTNTPPPPPQRNTSYLKTQVASPDTLYTAK
FVSYAGDEEDEEEATMAGSGGGHQSGQVKLSATRKSYGDLPASASPNHCRPQLPPTARKP
RPLSDGIFLSGSFQQPYNSNSTGPPLPAKPSSVPPGGFKGFNSYTGNSAGVVGSGEVYND
PRDKWPKSQEQENSIPGGNPESMTFKERQRLFSQGKEVSNKVKASRKLMELENELNTK
NT seq
5937 nt
NT seq
+upstream
nt +downstream
nt
atgcaacagttcagacggacggagagagggtcagaccagccgtccaccatgtcggggagc
agggaggaggagaggaggaaactggccgacatcatcaaccactggaacgccaaccggctc
gacctgttcgagatcagccggcccacagaggacttggagttccacggggtgatgcggttc
tacttccaggaccgcgtcgccggtaactttgccaccaagtgcatccgagtgtccagcaca
gcgacaacgcaggacgtcatcgagacgctggcggagaagttccgacccgacatgaggatg
ctgtcctcgccaaagtactcgctctatgaggtccacgtcagcggcgaagagcgtcagctg
gacctggacgagaagccgctggttgtgcagctgaactggaacaaagacgacagagaggga
cgcttcgtcctgaagaatgagaacgacatcctccctaagaagagccagagtaatggtccg
gagaaggagaaggacggcgtgatccagaacttcaagaggactttatccaagaaggagaag
aagaaggagaagaagagggagaaggagttcgcccggatccccgatggagacgagcatacg
ctcacccgggaggacggggaaaacagtcgtctggcggcagaggtttacaaggacatgccg
gagaccagcttcaccaggacaatctccaacccggaggtggtgatgaagaggagacgccag
cagaaactggagaaacgcatgcaggagtttatgagcggcgatgggaggcccgactcagga
gggactttgcggatatacgccgacagcctgaaacccaacatcccatacaagaccatcctg
ctctccacaagagacacggcagactttgctgtgggggaggcgctggagaagtacggtctg
gagaaggagaaccccagagagtactgcatcgcccggcaagaggataagtcaagcaaagaa
gtgattctggacgatgctgagtgtccactgcagatcttcagagactggcctgctgacaga
ggagcgctggtgttccagctgaagaagaggcctccagactaccaggggaggaagggaagg
aaagtggacgacaagggcctgcgaggcagcagcagcaccagctcactgcctccagagaaa
ctgccttacttggtggagctgagcccaggccgagggaatcactatgcctactacgcctat
cggcaccacgaagacgggtccgactcccgcgacaaaccaaagctctaccggcttcagcac
agcatcaccgaggtgggctcggactgcacggaggacggagccatccagctgctcggcccg
gggatcctgccccaccactgcgacctcatgcacagcgaaggcatggtgaccgtgacgccc
agcggcccagacgccgacaccttcgtggacgggcagcgactcaacgagaccgcggtgctt
cgttcgggctccaccctccagtttggctcggtgcacgtctttaagttcgtggacccgatg
ttcgaccagggcgggaagagagagccggccgccatgatgaggagccgacacaagtccggc
agtgtacccgaaacaaccttcgaccttcagggagacctccacagtggagctccgctgccc
accagcaagagctcaggggagatggagcgcggcatggtcaaacccatgatgagaggagag
cagcaggacaacaggtctcaggacacttcagtagaccgaactgagcttattctgccagcc
ggcatcgagttcagagacaactctgaagacaccttcctgtcagccatcatcaactacacc
aacagctccacggtccacttcaagctctcccccacctacgtcctgtacatggcctgtcgc
tacatcctgtcgccttcttaccggcccgacatttcgccgtccgagaggacgcataaagtc
atagccatcgtaaacaagatggtgagcatgatggagggagtcattcaggggattcctgaa
ggggatcagaagcagaagaacattgccggagcgctggctttctggatggccaacgcttca
gagctgctcaacttcgtcaagcaggacagagacctgagtcgcgtcacgctggacgcccag
gacgtccttgctcatctggtccagatggcattcaaatacctggtccattgtctccaggct
gatctgaacaactacatgccggccttcctagacgaccccgaggaacataacccacagaga
cccaagatcgaggacgtcctgcacaccctgacaggggcgatgtcgctgctgcggcgctgt
cgggtcaacgccgcgctgaccatccagctcttctcgcagctcttccacttcatcaacatg
tggctcttcaacaagctggtgacggacaccgactcgggtctgtgctgtcactactggggg
gccatcctccggcagcagctcagccacatcgaggcctgggcagagaaacagggcctggag
cttgccgccgactgccacctcagtcgaattgttcaggccaccaccctgctgaccatggac
aaatactccatgcaggatgtgcagaacatccacaacacctgctttaagctcaactccctg
cagctccacgctctcatgaccaactaccactgtgctccggacgagccttacatcccgcct
gagctgatagaccatgtggtggcggtggcagagaacactgcagatgagctggcgaggagt
gacgggagagaggttcagctggaggaggatccggacctccagctgcccttcctccttccg
gaggacggctactcctgcgatgtggtgcgcagcctccccaatggcctgcaggacttcctg
gagccgctgctgcagagaggtttctgtaggttagtgccccacccccgttcgcctggcact
tggaccgtccactttgaaggagctaactgcgatagccacttctctgctgccgacagttct
gagatgccaatgaggaaagacccggaggttgtcacggtaaccctgaagaagcacaacggc
atgggcctcagcatcgttgctgccaagggtgctggtcaggagaagctgggcatctacgtc
aagtcagttgtcaaaggaggagcagctgatgtggacggccgtttggctgcaggtgaccag
ctgctgagcgtggatgggcgcagcctggttggtctgtcacaagagagggcagcggagttg
atgacgaggacgggctcagttgtgactctggaggtcgccaagcagggagccatttaccac
ggactggccactctccttaaccagcccagccccctgatgcaaagagcagcagaccgaggc
cgtgacaaaaacgggaaactgcgaccaaagagtgaaggctttgagctgtacaacaactcg
gtgcagaacggctcacccgagagtccgcagggcggctgggactcttaccccgaaccaaag
aagatgagcggggacgatcgactcttcaagaaccgggccgaccaccgctctagccccaac
gtagccaatcagggccagagccctgcaggaaaagcggtataccccggaggacccggcacc
aagatcacctcagtctctaccgggaacctgtgtgcagacgatgagccttccccaccccgt
cctgaggcctaccccatccccacccagacctaccccagggagtactttaccatcccggcc
tccaagagccaggatcgtgttgttgtcgttccggggcaggggccctcacagcactggcag
ggcgtggaggacagagaacatcttcccgtggtcgacaaccttcacaacaacaacaacagc
agcatgcagcgtataaaccactcccaggaggagttgtaccctccaccagtaggtctgagg
ccagacgagcgcatgcagccacactaccagcaggactaccagccccgggacctggactac
cagcacagagatcttgactatccgagaggtccagcaggaggtgtcggaggtcctgaccac
tgggcccctcagccgcaggtgtcttcctcggtggagtcatccacgtccagccaggagcac
ctgaacttttcggcctcctcgtcttcctccaacaagaccacgaaccagaagacgggcccg
ggccgatggaaaacgcccaacgcccctcacgccgcgccgcagcatgcggcccagacgccg
tctcggtcggacctgccccctcctccacccccgccgccggccgcttacccagacgcctac
gacgcttacgagcctcaaccggagttaccgctcccgccgcctcccgctgcccttaatgcc
gtagcggcccagcaagctgcggaccgcaagaaacgcgaggagcaacaacgctggtatgag
aaggagaaagcgcggctagaagaagagaggtggggggagaggaagaggagagagcaagag
aggaagttgggtcagatccgggccaacccagtcatgcctgtccaacctcacaacaacggc
gggtccatgcctcctcctcaccaccagccccctctgccttccgtggccccgccccagccc
tacctccccccacagcctcagccccagcctcccccatccagaccggagaagctgtccagc
ctgcctcggtcagctgttcctcctccagccagtgcctccaacccgggcatggacacggtg
atcagggacctgttgccgcagcagcagccacggaccatcgagaggcgagacctgcagtac
atcaccatcagtaaggatgacccgacgtccagcgacagtctgtctccagacccctggaaa
cgagacgcccgcgagaaggccgagaagcagcagcagcttcacatcgtcgacctgctggac
aaagagatccaggagctgcagtcaaagccggagcgaacggcggaggaaagcgaccgtttg
aggaagctgatgctggagtggcagttccagaaacgactgcaggagtccaagcatagcgac
gacgacgaggaggaggatgacgacgaggacgtggacacaatgatgatcatgcagaggctg
gaggccgagaagagagccaggcagcagaatgctgtcccagctatctctgttctagacttg
ttgcaggacgaagaacgaaggcgtaagcaacagctggaggagattcgaaagcgggaggcg
gaggagcgagcaaagcaggaggaggaaaggaggtggagggacgagtctggagacaagagg
agacaggaggaggtgtactacactcgcctggaggccgagcggcgccggcagcacgaggag
gccgagagaaagctgctgacgcctgacgagccggccggtctgtatcggcccccgctgccc
cgggactaccaaccccccgcccccaccaaccctactaacacccccccgcccccaccacag
agaaacacctcctacctcaaaacccaggttgcctcccccgacacgctctacaccgccaag
tttgtctcctacgcgggcgacgaggaagacgaggaggaagccacaatggcgggcagtggt
ggcggccatcaatcaggtcaggtgaagctgtcggcgacccggaagtcgtacggcgacctc
ccggcctccgcctcccccaaccactgcaggcctcagctgccgcccactgcgcgcaagccc
cgccctctttctgacggcatcttcctgtctggctcgttccagcagccatacaactccaac
agtacaggccccccccttcctgccaaacccagctccgtccccccaggaggctttaaaggg
tttaactcgtacactggaaactcggcaggagttgtaggatcgggagaagtctacaacgac
ccgcgcgacaaatggccgaaaagtcaggagcaggagaactcgatcccaggaggcaacccc
gagagcatgaccttcaaggagcgccagcgcctcttctctcaggggaaggaggtttccaac
aaggtcaaggcttcacgcaaactcatggagctggagaacgagctcaacaccaagtag
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integrated database retrieval system
