Pungitius pungitius (ninespine stickleback): 119195240
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Entry
119195240 CDS
T07626
Symbol
taf1b
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit B
KO
K15213
TATA box-binding protein-associated factor RNA polymerase I subunit B
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppug03021
]
119195240 (taf1b)
Transcription machinery [BR:
ppug03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
119195240 (taf1b)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Rrn7_cyclin_C
Zn_ribbon_RRN7
Rrn7_cyclin_N
DUF5816
FGase
Motif
Other DBs
NCBI-GeneID:
119195240
NCBI-ProteinID:
XP_037305932
LinkDB
All DBs
Position
20:361726..369039
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AA seq
566 aa
AA seq
DB search
MDEEHTAGYKEPCAVCSAVDWGISDEGRFYCRSCHNVIERTKEVVDPTFNPGTNRVTTIG
RGPRTKTLERGRRWALCEGFQFILRNQADALIRLGVGPRFKDEVLCELWRIFLQKSGQAY
ASPLMRPSRRGGRGPDTDSDSAAESTANASETDRDSCNAGSTSDWSTFSGSLDAVSYLSA
DMRTTQHSLLSMKRTLALIHMALVWSREPLTLSDLLRLVNEGHVPYVNAYQELPDEMKLE
GKDALLFRVQSIPSHRVVHSDAQELVLFLQLPAFPPISRQSLLHPALLSLRYLMDANLPD
ELHPWVCRLMERAGMADQTLHTVHLKSCPSLPRYDVQTAALIIVTMKLLFGLDDHTEWDL
SHEACDQDDTATMFSLRRWFRVVQAALTRAQHRRKHQVARKQWAPQKLLHPASQKKSVVL
KTKRVAEQVQVCFEKLSGRPVSVQPGDPSSFRFFWGVEDSADGPSLHHKKLDGVLTLKDG
VLTPSNSTYWHPALRSSRRCSRLYSDVEATLPRTFVWLLQLFCFLLEVKPADLFQEVLRV
EARVVNGNSRKRSRKARSRSRSKIKT
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atggacgaagaacacacggccggctacaaggagccctgcgctgtgtgctccgcggtggat
tggggcatttcggacgaaggtcgtttctactgcagatcctgtcacaatgtcatcgagaga
accaaagaggtggtggaccccaccttcaatcccggcaccaaccgggtcaccaccatcggc
agaggacccagaaccaagacgctggagcgcgggcggcggtgggcgctctgtgagggcttc
cagttcatcttgaggaaccaggccgacgccctcatccgcctgggggtcggcccccgcttc
aaggacgaggttctgtgtgagctgtggagaatcttcctgcagaagagcggccaggcgtac
gccagccccctcatgaggccgagcaggaggggggggcgggggccggacaccgactcggac
agcgccgccgagtccaccgccaacgccagcgagacggacagagacagctgcaacgcaggg
agcaccagtgattggtcgacattttcgggctctttggatgctgtcagctacctgtcagct
gacatgaggacgacccaacacagtctgctgagcatgaagaggactctggcgctgatccac
atggcgctggtgtggagcagagagccgctgaccctcagcgacctgctcaggctggtgaac
gaaggtcacgtcccgtacgtcaacgcctaccaggaacttcctgatgagatgaagctggaa
ggcaaagacgctcttctgttcagagtgcagagcatcccttcccaccgggtggtgcacagc
gatgctcaggagctcgtcctgttcttgcagcttcctgcttttcctccaatcagccggcag
agtctgctgcacccggctctgctcagcctgcgctacctgatggacgccaacttgcccgac
gagctccacccgtgggtctgccggcttatggagcgcgctggtatggcggatcaaacgctc
cacaccgtccacctgaagagttgcccctccctgccgcggtacgacgtgcagaccgccgcc
ctcatcatcgtcaccatgaagctgctcttcggcctggacgaccacactgagtgggattta
tcccatgaggcatgtgaccaggacgacacagcaaccatgttcagcctgaggaggtggttc
agggtggtgcaggccgctctgacccgagctcagcaccggaggaagcaccaggtcgccagg
aagcagtgggcgcctcagaagcttcttcaccccgccagccagaagaaaagtgttgtgctg
aagactaaaagggtagcagagcaggtgcaggtctgctttgagaagctgtcgggtcgtccg
gtctcggtccagccgggcgacccgtccagcttcaggttcttctggggtgtcgaggactct
gcagacggacccagtctgcaccacaagaagctggacggagtcttgaccctgaaggacggc
gtcctgactccgtccaactccacctactggcatccagctctccgctcctcgcggaggtgc
tccaggctctactccgacgtggaggccacgctgccccggaccttcgtgtggctgctgcag
ctcttctgcttcctgctggaggtgaagccggcggacctgttccaggaggtgctgagggtg
gaggccagggtcgtcaacggcaacagcaggaagaggagcaggaaggccaggtccaggtcc
agaagcaagatcaagacctga
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