Pungitius pungitius (ninespine stickleback): 119195394
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Entry
119195394 CDS
T07626
Symbol
cdc40
Name
(RefSeq) pre-mRNA-processing factor 17
KO
K12816
pre-mRNA-processing factor 17
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119195394 (cdc40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ppug03041
]
119195394 (cdc40)
Spliceosome [BR:
ppug03041
]
Complex C
Other components
Step II factors
119195394 (cdc40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
EIF3I
WDR55
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
ANAPC4_WD40
Beta-prop_WDR75_1st
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_TEP1_C
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_NWD2_C
WD_LRWD1
Beta-prop_Vps41
PQQ_2
Motif
Other DBs
NCBI-GeneID:
119195394
NCBI-ProteinID:
XP_037306195
LinkDB
All DBs
Position
20:8682290..8694845
Genome browser
AA seq
583 aa
AA seq
DB search
MSATTACLVSYGSDSDSDNESTSKTGVVNVDPTNPDSTAHLKPLKSVPTMSVALLNSAPE
VAVKEAVETGTHLDPSLKEVTYNPTFETMFAPEFGPVNPFKSQQMAAPRNMLSGYAEPAH
LNDFMFEQQRRTFSTYGYALDPSVDTHQVTAISYIGAVDEAEKNKGLTVFETGQKDKRSE
KRKKIKGGEAGEIDTFLGPWAKYIDEKDSAKPSEEEQKELDEITAKRQKKGKNEEEAPAE
EKTILHVKDMYDYQGRSYLHIPQDVGINLRSTEAPDKCYLPKKQIHVWSGHTKGVSAIRL
FPNSGHLLLSSSMDCKIKLWEVYGERRCIRTFIGHSKAVRDICFNNSGTKFLSAAYDRYL
KLWDTETGQCISRFTNRKVPYCVKFNPDEEKQSLFVAGMSDKKIVQWDIRTGEVVQEYDR
HLGAVNTITFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKWL
ACQSMDNQILIFGAQNRFRLNKKKVFKGHMVAGYACQVDFSPDMSYVVSGDADGKLNIWD
WKTTKLYHRIKAHDKVCISALWHPHETSKVITCGWDGQIKLWD
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atgtctgccaccacagcctgcctcgtttcctacggtagcgactcggattcagataatgag
tcaacttctaaaaccggtgttgttaacgtggacccgacgaacccggactccaccgctcac
ctcaaacctctaaaatcggtccccacgatgtctgtggctcttctcaattctgctcccgag
gtggccgtcaaggaggctgttgagactggcacacatctggacccttcattgaaagaagtc
acttacaacccgacgtttgaaaccatgtttgcgccggagtttgggccagtgaacccattt
aaaagccagcagatggctgcccccagaaacatgttatctggctatgcagaacctgctcac
ctcaacgactttatgtttgaacagcaacggaggaccttctccacctatggttatgcttta
gatccatctgttgacacacaccaggtaaccgctatcagctacattggcgcagtggatgag
gcagagaaaaacaaagggctaactgtgtttgagaccggacagaaggacaagaggtctgag
aaaagaaaaaagatcaagggtggagaggcaggagagattgatacattccttggaccatgg
gcaaagtacatagatgaaaaagatagtgccaaaccatcagaggaagagcaaaaagagctg
gatgagatcacagccaagcggcagaagaagggaaagaatgaggaagaagctcctgcagaa
gagaaaactattctccatgttaaagacatgtatgattaccagggcaggtcgtacctccac
atcccacaggatgttggtatcaacctgcgctctacagaggctccagacaagtgttacctg
cctaagaaacagattcatgtctggtccggacacaccaagggtgtcagtgccatcagactg
tttcctaactctggtcatcttctgctctcctcttccatggactgtaagatcaagctgtgg
gaagtgtacggcgagaggaggtgcatacggacgtttattggtcacagcaaggcagtgcga
gacatttgcttcaacaacagcgggaccaagttcctcagcgccgcctacgaccgatacctc
aaactctgggacactgaaacaggccagtgcatctcccgcttcaccaacaggaaagtgccg
tactgcgtcaagttcaacccggacgaggagaagcagagccttttcgtggccggcatgtcg
gataagaagatagtccagtgggacatccggacaggtgaggtcgttcaggagtacgaccgt
cacctgggagccgtcaacaccatcaccttcgtcgatgagaaccggcgcttcgtgagcacg
tcggacgacaagagcctccgagtttgggagtgggacatccctgtggacttcaagtacatc
gccgagcccagtatgcactcaatgccagctgtgacactctctcctaacggtaaatggcta
gcgtgccagtctatggacaaccagattctgatctttggagcccaaaaccgcttcagactg
aacaagaagaaagtcttcaaaggccacatggtggctggctacgcctgccaagtggacttc
tcccccgacatgagctatgtggtgtccggagatgcggatggaaagctgaacatttgggat
tggaagaccaccaagctgtaccacaggatcaaggctcacgacaaggtgtgcatcagcgca
ctatggcatccgcacgaaacctctaaggtcatcacctgcggttgggatggacaaatcaag
ctctgggactag
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integrated database retrieval system
