Pungitius pungitius (ninespine stickleback): 119195716
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Entry
119195716 CDS
T07626
Symbol
blm
Name
(RefSeq) Bloom syndrome protein homolog isoform X1
KO
K10901
bloom syndrome protein [EC:
5.6.2.4
]
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03440
Homologous recombination
ppug03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
119195716 (blm)
03460 Fanconi anemia pathway
119195716 (blm)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppug03032
]
119195716 (blm)
03400 DNA repair and recombination proteins [BR:
ppug03400
]
119195716 (blm)
Enzymes [BR:
ppug01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
119195716 (blm)
DNA replication proteins [BR:
ppug03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
119195716 (blm)
DNA repair and recombination proteins [BR:
ppug03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecQ family DNA helicases
119195716 (blm)
Bloom's syndrome complex (BTR)
119195716 (blm)
FA (Fanconi anemia) pathway
119195716 (blm)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
BLM_N
Helicase_C
RecQ_Zn_bind
BDHCT
HRDC
RQC
DUF1178
zf-C5HC2
Motif
Other DBs
NCBI-GeneID:
119195716
NCBI-ProteinID:
XP_037306776
LinkDB
All DBs
Position
Unknown
AA seq
1388 aa
AA seq
DB search
MSCLPQNNLKEQLARHSNAAQSKLSLAKPKPGAFSFKKSSSTTPRVEAPTKVISANVLAN
SNVNVSKNNLVTQSRLTFPNKLERPQKSESSNFFSVSSKSKSDFISPAGNRAPAGQTPAA
VSSIKVTAPTKSYNQFTSGNGSYSKSLDTSLGFPMDDWDDLDDFEIPVKNDSGMSTNQVS
SFNEEGAQLSLMEPQLSNCNGNSLSKSEKSCMETATLEHRVCDATDSPGQCLNNEPADFE
FEVSPLKTTRKRPPGHRRAVMSDSEEDNDVVLEPFKAKTDDKTKWTDPKVIQLYDNSDPE
DYIPPSPILNEISRTTSAMETSRDSSLQSKGSITTLNASSDHLSKDKTNEQLSSIMQCIC
SLVDSIPEHEVIGLSCGSELLLKRAQRKRILATGGCNLLSMQQPDSTVISESSLKGRSSF
SCDTSSVISSSGSRPLDSKKPLQIRRSSVISVDYDSDHTDSTTNTKPSHSRSSGADHVTN
QNICDSPSTHSLTGLSFNLSKKSSTYADCSDLFSPKKPETVVQNKSNDPTASTAAEDIEL
DDFYTDYFDIDDFNDSDVPDYFDEPPNSSAVASTVKELQSRESPWGNKPTTPAPAPKPAK
ICSPEPTFRNPAHDRFRGFNFPHSQEMMKIFHKRFGLHQFRFNQLEAINATILAEDTFVL
MPTGGGKSLCYQLPACVSPGVTVVISPLKSLIVDQVQKLTTLDIPATSLSGSKSDSEAGR
IYMQLSRKDPIIKLLYVTPEKVSASQKLISAMQNLYERGLLVRFVIDEAHCVSQWGHDFR
PDYKRLHELRQKFPGVPMIALTATATPRVQKDILNQLSMTRPQVFTMSFNRTNLKYAVLP
KKPKKVADDCIDWIKKHYPRDSGIIYCLSRNDCDAMAESLQRAHISALSYHAGLSDGDRE
YVQSKWINQDGCQVICATIAFGMGIDKPDVRYVIHASLPKSVEGYYQESGRAGRDGEISH
CILFYSYTDVHRIKRIISMDKEGDRHTKATHFNNLHSMVHFCENVMECRRLQLLAYFGEL
KFNKMFCKEHADVSCDNCAKPNQYKMRNVTEDVKKIVKFVQENCEKVGSRFGRTAQQNRL
TLNMLVDIFVGSKSAKVQTGMFGMGGAFSRHNADRLFKKLVLDNILEEDLYITINGQAVS
YMSAGPKAMNVLSGHMQVEFYETESASSIRKHKAAVSTNVSQREQKVQDCLKELTDLCKQ
LGKAFGIHYYNIFSTAALKKIAEKLSPDPEVLLQIDSVTEDKLEKYGAEVIQVLAKYSEW
QLPEEPTETTGDGWIDTAQGRSYGDEDDDAESSTYFRGQSAQGQKRKKAPFFKYSKKRKA
SGNSKGRGYSSNKSWSSSGSRGGSSAAGRGSRSSTGDSSVSRKPGFLNVPAPQTNQRPFL
KPAFSHLG
NT seq
4167 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgtcttccacaaaataacttgaaggagcagctggcgaggcacagcaatgcagct
cagagcaagttgtctctggctaaacccaaaccgggggccttttctttcaagaagtcctca
tcgactacacccagggtggaagccccaaccaaggtaatcagcgctaatgttttggcgaac
agcaatgtcaatgtctctaaaaacaatttggttactcaatctcgtttgacatttccaaac
aagctcgagagaccacaaaaatccgaaagcagcaacttcttctctgtaagttcaaaaagc
aagtctgacttcatcagcccagcaggtaaccgtgctcctgcaggccagactcctgcagca
gtgtcttctattaaggtgaccgctccaactaagtcctacaaccagtttacaagtggcaat
ggaagctattccaaaagtctggatacatctcttggattcccgatggatgactgggatgat
ctcgatgactttgagattcctgtcaaaaatgactctgggatgagcaccaaccaagtgtca
tcgtttaatgaagaaggagcacaattatctcttatggagcctcagttgagcaactgtaac
ggaaatagcctttccaaaagtgaaaaatcttgtatggaaacggctacgctggagcaccga
gtctgcgacgcaacagattcaccaggacagtgtttgaataatgaaccagcggattttgag
tttgaagtttctccactaaaaacaaccagaaaacgtcctcctggtcataggagggccgtc
atgagtgatagtgaagaggacaacgatgttgtgcttgagccgttcaaagcgaagaccgat
gacaagacaaaatggactgacccgaaggtgatacagctctatgacaactcagatcctgaa
gattacattcctccttctccaatcctgaatgagatatctcgtactacttctgcaatggag
accagcagagacagttctttgcaatcaaaaggatccatcaccacattaaacgcctcgtct
gatcacctctcaaaagacaaaacaaacgagcaactctcaagtattatgcagtgcatttgt
tctctggtcgattccatccctgaacatgaagtgataggtctgtcctgtggaagtgagctt
ttgctgaagagggcccaaaggaaaagaattctcgcaaccgggggttgcaatttattgagt
atgcagcagccagacagcactgtgatttctgaatccagccttaaaggaagatcttcgttt
agctgtgatacgtctagtgttatatcatctagcggctccaggcctttggactcaaagaag
cctcttcagatcaggagatcttcagtcatctctgtggactatgattctgatcacacagac
agtaccaccaacacaaagccctcgcatagtaggagcagcggcgcagatcatgtgacaaac
cagaatatctgtgactctccatcaacccacagccttacgggtctgtcttttaatttgtct
aagaaatcgagcacatacgcggattgttcagatctcttctcaccaaagaagccggagact
gtcgttcagaacaaatctaatgatccaacagccagcactgcagcagaagacattgaacta
gatgacttttacacagactactttgacatagatgacttcaatgactccgatgtgcccgat
tactttgacgaacccccaaactctagcgctgtggcttcgacagtgaaagaactgcaatca
cgcgagtctccgtgggggaacaaaccaacaactcctgcacctgcacccaagcctgcaaag
atctgctcacctgaacccaccttcagaaacccagcccacgatcgcttcagagggttcaat
ttcccccactcacaggagatgatgaagattttccacaagcgttttggtcttcatcaattc
aggttcaatcaacttgaagcaatcaatgcaacgattcttgcagaagatacctttgttttg
atgcccacaggtgggggtaaaagcctgtgctaccagctgccggcctgtgtgtcacctggc
gtcactgtggtcatctccccactcaaatctctcattgtggaccaggtccagaaactcact
acactggatataccagcgacaagcctctctggaagtaaaagtgacagcgaagcagggagg
atttatatgcagctctctcggaaagaccctatcattaaacttctctacgtcacaccggaa
aaggtgagtgcaagtcagaagctgatctccgccatgcagaacctgtacgagcgtggcctt
ttggtccgctttgtcatagatgaagcccattgcgtcagtcagtggggtcacgattttcgt
ccagactacaagaggttacatgaactgcgccagaagttcccgggcgtgcccatgattgcc
ctgacagccaccgccaccccgcgggttcagaaggacatcctgaaccagctcagcatgacc
cggccacaggtgttcaccatgagtttcaacagaacaaacctgaagtacgctgtcctgccc
aagaaacccaaaaaggttgcagatgactgcatcgactggattaagaagcactacccacgt
gactccggcatcatttactgcttgtcccgtaatgactgtgatgccatggctgaaagtctg
cagagagctcacatatcagctctgtcgtatcacgcgggcctaagtgacggcgacagagaa
tacgtgcagagcaaatggatcaaccaagacggctgccaggtcatctgtgccaccatagcg
ttcggaatgggcattgacaagcccgacgtgcgttatgtgatccacgccagtctgcctaag
tcggtagagggatactaccaggagtctgggagagctggcagagatggagagatctctcac
tgcattctcttctactcctacaccgacgtccatcgcatcaagaggatcatcagcatggac
aaagaaggtgaccgacacaccaaggcgactcatttcaacaatctgcacagcatggtacac
ttttgtgagaacgtgatggagtgcagaagacttcagctgcttgcatactttggggagctg
aagtttaacaaaatgttctgcaaggaacacgcagacgtcagctgtgacaactgtgccaaa
cccaaccaatacaagatgagaaatgtcactgaagatgtgaagaagattgtaaagtttgtt
caggagaactgcgagaaagttggatcaaggtttggcagaactgctcagcaaaaccgactg
acactgaatatgttggtggatatctttgtaggatccaagagtgccaaggtacagacagga
atgtttgggatgggaggagccttctcgaggcacaatgctgaccgtctcttcaaaaaactt
gtcctggacaacatcctggaggaagatctttatatcaccatcaacggccaagccgtgtcg
tatatgtctgctggacccaaagccatgaatgtactgtctggacacatgcaggtggagttc
tatgagaccgagagtgcctcatccatcaggaaacataaagctgcagtgagcacaaacgtc
tcccagagagagcagaaggttcaggattgtctgaaggagctgacggatctttgcaagcag
ctggggaaagcgtttggcattcactattacaacatcttctctactgctgccttaaaaaag
atagctgagaagctttctcctgatcctgaggtcctccttcagattgatagtgtcactgaa
gacaaactggaaaagtatggagctgaggtcattcaggttctagcgaaatactcagagtgg
cagctgcctgaggaaccgactgaaaccacgggagacgggtggatagacacggcacaaggc
cgctcgtacggagatgaagatgacgacgcagagtcctccacgtacttccgtggtcagtct
gcacagggacagaagagaaagaaagctccattcttcaaatattccaagaagagaaaagct
tctggcaactcaaaaggtcgtggctacagcagcaataagtcgtggtcgtcgtccggctcc
agaggcgggtccagtgctgcgggtcgggggtccaggagctcgacgggagactcttcagtc
agcaggaaaccgggcttcctaaacgtcccggcccctcaaaccaaccagcgacccttttta
aagccggccttttcacacttgggatag
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integrated database retrieval system
