Pungitius pungitius (ninespine stickleback): 119195729
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Entry
119195729 CDS
T07626
Symbol
col4a4
Name
(RefSeq) collagen alpha-4(IV) chain
KO
K06237
collagen type IV alpha
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug04510
Focal adhesion
ppug04512
ECM-receptor interaction
ppug04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119195729 (col4a4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
119195729 (col4a4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
119195729 (col4a4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ppug04147
]
119195729 (col4a4)
00536 Glycosaminoglycan binding proteins [BR:
ppug00536
]
119195729 (col4a4)
Exosome [BR:
ppug04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
119195729 (col4a4)
Glycosaminoglycan binding proteins [BR:
ppug00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119195729 (col4a4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
119195729
NCBI-ProteinID:
XP_037306847
LinkDB
All DBs
Position
3:595057..616674
Genome browser
AA seq
1669 aa
AA seq
DB search
MEDKMLPTFCSAPCGSTWLWCLLMVLTALLPALGGDLNEMCAGRDCSTCQCFPAKGARGS
PGPLGQQGPQGPLGFPGPLGPLGQKGDRGDEGPMGGRGPKGDVGSIGVPGFPGLEGIPGH
PGPAGGPGFPGLDGCNGTRGERGDPGLPGETGPDGEPGSEGLKGFPGDPAVDFLQYPGVP
GDVGSAGPPGRQGEPGLPGPVGFRGPSGPDGTNGYPGRPGSRGPPGERGRSLPGQKGDEG
YQGLQGQPGPFEYVDPPEDRYLKGDKGSQGPKGVCGRQGMSGLDGLTGIKGEKGIVGFPG
SRGFSGNPGRPGERGFKGIQGSPGLPGLIGRDGPKGMLGNPGPKGLPRDVDVTHSGDIGD
PGAPGPRGPPGDIGPIGIQGRTGARGRSIPGPAGAVGPRGAPGCKGDKGDPGQVYQCVPT
PGEPGKPGFSGIKGMKGQQGFPGTYCVPGTLGESGDPGDQGPKGAQGFPGIKGSHGDCSC
GPPDKLMGPPGRVGDPGSSGFPGPPGAPGLRGDNGFPGDTGESGPQGLGGYPGVNGFKGQ
KGDFSVVDFKGEKGNRGQSGPVGQQGFLGRRGLDGPQGTPGDPGPEGESHVSSPGDRGLP
GLRGPKGLSGASGPPGQGIVGALGQRGGPGDPGPTGFPGAPGPKGVRGDNLPCVPRNPGP
PGEKGDTGDEGYRGLPGPPGFRGLSGPDGLKGNRGQPGLPGPRGREGPQGFVGDTGEEGR
EGISFSGDPGVPGLPGSSGLRGPAGDSAVGPSGPIGFPGRPGPQGPKGVPGPPGINGLEG
LPGLAGAAGVKGQRGQDGAPGITGPQGLTYNSCDAGKPGSRGLLGPLGPVGPPGFYGEKG
EIGEGGPPGFGPQGPPGSPGSPGLPGYLGPQGSPGPDGDSGLPGLDGTKGLTGLVGHDGG
PGGSGRTGILGAPGRIGERGFNGRDGGPGCEGRKGEKGCEGVPGPPGETKVVQIKGGRGK
QGTSGINGFPGARGSKGVRGAAGKPGFGGINGPSGIVGLPGPDGPFGPPGSPGPPGRNGP
PGFIGFPGETGDPGDLGRPGKKGESGHQGCPGPKGDKGESISSIGPPGDKGPPGDKGPLG
SPGPPGDPGRVGFIGSPGPRGCKGDPGDQGELGPTGVMGPTGPRGRSGFPGLPGKVGADG
LPGPPGFHGLPGPPGPLGLHGLDGLKGVKGDMGTRGLGEAGPPGFIGLPGEKGPPGPPGY
SGSSSPGPPGPKGPLGPTGPPGNIGPPGKSGPDCNVLIPGPRGDPGPLGEDGEPGCVGEI
GDPGQNTPLSGDVGDNGYLGCEGPGGPQGLQGPRGLPGQPGGPGEKGTRGSTGLMGISGP
QGPKGCTGPGGTTGPKGPTGLVGPKGEMGRVLSCFPQSPAPPGPPGPPGPDGNVGIEGVF
GQIGPKGQNGDFGSEGLIGIKGVPGIDGGRGGPGRPGEDGVLGAKGYSGRMGDPGLPGPI
KNLNSGFLLVLHSQSNVIPSCPVDMRVLWDGYSLLYLEGQEKAHTQDLGQAGSCMRVFST
MPFSSCNMGTCSYASRNDKSYWLSTTAAVPSLPVGGASIKEHISRCVVCEAPSSPVTLHS
QTSDQPDCPPHWRSLWTGYSFLMHTGAGDEGGGQSLTSSGSCLTDFRAQPFVECQGPRGT
CHYFANIYSFWLTRVEATASAYEQGSSTTLMEGWQQRESIGRCTVCMRK
NT seq
5010 nt
NT seq
+upstream
nt +downstream
nt
atggaggacaagatgctgccgactttctgctccgccccctgcggctccacctggctctgg
tgcctcctgatggtcctgacggctctgctccctgctctcgggggcgacctcaacgagatg
tgtgccggcagggactgctccacctgtcagtgtttccccgccaaaggagcaaggggttct
ccgggccctctggggcagcagggtcctcaggggcctctgggcttcccaggccctctgggg
cctctgggacagaagggcgacagaggagacgaggggccgatggggggcagaggaccgaag
ggagacgtgggaagcattggcgttcccggttttcctggtttggaaggaatcccgggtcac
ccgggtccggctggaggtcctggttttccgggtctggacgggtgtaacgggaccagagga
gagagaggagaccctggacttccaggagaaaccggacccgacggagaaccgggttctgaa
ggactgaaagggttcccaggagatccagccgtcgactttttacagtacccaggagtacct
ggagacgttggttccgctggacctccgggtcgtcagggggaaccaggtctccccgggccg
gttgggtttcggggtccatcgggaccagatggaaccaacggttacccgggtcggcctggc
tccaggggtccacctggagaaagaggtcgttctctgcctggacagaaaggagacgagggg
tatcagggtctccaggggcaaccaggtccatttgagtacgtcgaccctccagaagaccgg
tacctcaaaggagataagggttctcaggggcctaaaggagtctgtggaaggcaaggaatg
tcgggtttggacggtctcaccgggatcaaaggggagaaagggattgtgggatttccaggt
tccagggggttttcaggtaaccctggtcgtcccggagaaagaggattcaaggggattcaa
gggagtccgggtcttccgggtctgattggtcgagatggtccaaagggcatgctgggaaat
ccaggtcccaaaggcctccccagggacgtggacgtaacacactcaggtgacatcggagat
cccggggcccccggaccaaggggccctccaggagacatcggaccaataggaatccagggc
cgcaccggagcccgtggcaggtccatacccggtccggcgggcgccgtgggtccgagggga
gctccaggatgcaaaggggacaaaggagatccgggtcaggtgtaccaatgcgtacccacg
cctggagaacctggaaaaccgggtttttctggcataaaaggaatgaaaggacaacagggg
tttccaggtacttactgtgtgcccgggaccctgggagaatctggggatccaggtgatcag
ggtccaaagggggcccaagggtttccaggaatcaaaggtagccacggcgactgttcttgt
ggtccaccagacaaactgatgggccctcccggcagagtgggtgaccccgggtcttcaggg
tttcctggacctccgggggccccggggctgagaggagacaatggttttcccggagacacg
ggagaaagtggaccgcagggtctgggtggatatccaggtgtcaacgggttcaaaggtcaa
aagggggatttcagtgtggtggattttaaaggtgagaaaggaaaccggggccagtcggga
cctgtaggccaacaggggtttttagggagaagaggacttgacgggccccaggggacccca
ggagaccccggccctgagggagaaagtcatgtgagttctcctggagatagaggcctccct
ggacttcgagggccaaagggcttgtcaggagcttctgggcccccgggtcagggtatagtt
ggagcattaggacagcgtgggggccccggggacccgggaccaactggcttcccaggggcc
ccaggaccgaagggggtaagaggggacaatctgccctgtgtgcccagaaaccccggcccc
ccgggagagaaaggagacactggagatgaaggttacagagggctgccaggtcctccaggg
tttcgtggcctcagtggacctgatggacttaaaggtaacagaggtcagcctggactgcct
ggaccacgtggacgcgaaggacctcaaggttttgttggtgacaccggagaagaaggacgt
gaaggcatcagctttagtggagatccaggtgttccggggctccccggctcttctggactc
agaggcccagcgggtgactctgctgttgggccctcaggacccattggctttccaggacga
ccgggccctcaaggacctaaaggggtccccggccccccagggatcaacggactggaagga
ctccccggtctggcaggggccgccggtgtcaagggccagagaggacaggatggggcaccg
ggtataaccggccctcaggggctcacatacaactcctgtgatgcagggaagcctggttcc
aggggccttttaggccctctaggacctgtaggacctccaggtttctatggggagaagggg
gagattggcgaggggggtcctccgggttttggccctcaaggccctccaggttcaccgggt
tctccgggtttgcctggttacctggggccacagggctcaccgggtcctgatggagactct
ggactgcctgggctggacggtacgaaaggtctgacagggctggtgggccatgacggaggc
ccggggggctctggacggaccgggatcctcggagctccgggaaggattggggagagaggg
ttcaatggacgagacggaggtcccggatgtgagggccggaagggagagaagggctgtgaa
ggggtcccggggccaccgggagagaccaaggtggtccaaatcaagggagggagaggaaaa
caaggaacgtctggcatcaatggctttcctggagctcgaggaagtaaaggtgtgcgagga
gctgctggtaagccgggttttgggggcattaacggaccctcgggcatcgtaggactccca
ggacccgatggtccgttcggaccaccaggatctccaggaccacccggacgcaatggtcca
cctggattcatcggcttcccaggagaaaccggagatccgggtgacctgggacgtccgggg
aaaaaaggagaatctggtcaccaaggatgtcctggacctaaaggtgataaaggagagtcc
atcagtagtatcggtccacctggagacaaagggcctcctggagacaaagggcccttagga
tctcctggacctccaggagatccaggtagagtcggtttcattgggtctccggggccgaga
gggtgcaaaggagatccaggggatcaaggggaactgggcccaacaggtgtaatgggcccc
actggtcccagaggccgttcaggttttccaggtctacctggtaaagtcggtgctgatggt
cttcctggacctccaggcttccatggtctcccaggtcctcccggaccgctcggtctccat
ggacttgacggactgaaaggagtaaagggggacatggggaccagaggtctgggtgaagcg
ggccctcctggttttattggtcttccgggggaaaaaggtcctcctggtccaccgggatac
agtggttcatcctcaccaggcccaccaggaccaaagggccccttaggacctacagggccg
cctgggaatataggacctccgggtaaatccggaccggactgcaacgttctgatcccgggg
cctcgtggagatcctggtcctcttggagaagacggagagccagggtgtgtcggtgaaatt
ggtgatccaggtcagaacactccgctatctggtgacgtcggggacaacggatacctggga
tgcgaggggcctggaggcccacagggacttcaggggccaagaggactgccaggacagccc
ggaggtccaggagagaaaggtacgcgggggtccactggtctgatgggaatctctgggcct
cagggtcctaaaggctgtactggacctggtggaactactggaccaaaggggccaaccgga
ttggtgggtccaaagggggagatgggacgagtcttgtcctgtttccctcagtccccagcg
ccgccggggccacccggccctccaggcccagacgggaatgttggcatagagggagtgttc
ggccaaatcggacccaaaggtcagaacggggacttcggatctgaaggactgataggcatt
aaaggggtccccggtatagatggtggacgaggaggcccgggccggccgggggaagacgga
gtccttggagccaaaggttattctggtcgaatgggggaccctgggctgcctggacccatc
aagaacctgaactcgggcttcttgctggtgttgcacagccaatcaaatgtaattccctcc
tgtccagtagacatgagggttctgtgggacggatacagtctgctgtacctggaaggtcag
gagaaagctcacactcaggacctgggtcaggcaggttcttgcatgcgggtcttctccacc
atgccgttctcctcctgcaacatgggaacctgctcctacgcaagtcgcaacgacaaatcc
tattggctgtccacaacggcggccgtccccagcctgccagtgggcggagcctccatcaag
gagcacatcagccgctgtgtagtgtgcgaagccccctcctcaccggtcactctgcacagc
cagacctcagaccagccagactgccccccccactggaggagcctgtggaccggatattct
ttcctaatgcacacaggagccggcgatgagggcggcggccagtctctgacatcatcagga
agctgcctgacggacttccgggcccagcccttcgtggagtgtcaaggccctcgaggaacc
tgccactacttcgccaacatctacagcttctggctcaccagggtggaggccaccgcctcg
gcctacgagcagggctcctccaccacgctgatggagggctggcagcagagggagagcatc
gggaggtgcacagtctgcatgaggaagtaa
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