Pungitius pungitius (ninespine stickleback): 119195729
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Entry
119195729 CDS
T07626
Symbol
col4a4
Name
(RefSeq) collagen alpha-4(IV) chain
KO
K06237
collagen type IV alpha
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug04382
Cornified envelope formation
ppug04510
Focal adhesion
ppug04512
ECM-receptor interaction
ppug04518
Integrin signaling
ppug04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119195729 (col4a4)
04518 Integrin signaling
119195729 (col4a4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
119195729 (col4a4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
119195729 (col4a4)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
119195729 (col4a4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ppug04147
]
119195729 (col4a4)
00536 Glycosaminoglycan binding proteins [BR:
ppug00536
]
119195729 (col4a4)
Exosome [BR:
ppug04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
119195729 (col4a4)
Glycosaminoglycan binding proteins [BR:
ppug00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119195729 (col4a4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
119195729
NCBI-ProteinID:
XP_037306847
LinkDB
All DBs
Position
3:595057..616674
Genome browser
AA seq
1669 aa
AA seq
DB search
MEDKMLPTFCSAPCGSTWLWCLLMVLTALLPALGGDLNEMCAGRDCSTCQCFPAKGARGS
PGPLGQQGPQGPLGFPGPLGPLGQKGDRGDEGPMGGRGPKGDVGSIGVPGFPGLEGIPGH
PGPAGGPGFPGLDGCNGTRGERGDPGLPGETGPDGEPGSEGLKGFPGDPAVDFLQYPGVP
GDVGSAGPPGRQGEPGLPGPVGFRGPSGPDGTNGYPGRPGSRGPPGERGRSLPGQKGDEG
YQGLQGQPGPFEYVDPPEDRYLKGDKGSQGPKGVCGRQGMSGLDGLTGIKGEKGIVGFPG
SRGFSGNPGRPGERGFKGIQGSPGLPGLIGRDGPKGMLGNPGPKGLPRDVDVTHSGDIGD
PGAPGPRGPPGDIGPIGIQGRTGARGRSIPGPAGAVGPRGAPGCKGDKGDPGQVYQCVPT
PGEPGKPGFSGIKGMKGQQGFPGTYCVPGTLGESGDPGDQGPKGAQGFPGIKGSHGDCSC
GPPDKLMGPPGRVGDPGSSGFPGPPGAPGLRGDNGFPGDTGESGPQGLGGYPGVNGFKGQ
KGDFSVVDFKGEKGNRGQSGPVGQQGFLGRRGLDGPQGTPGDPGPEGESHVSSPGDRGLP
GLRGPKGLSGASGPPGQGIVGALGQRGGPGDPGPTGFPGAPGPKGVRGDNLPCVPRNPGP
PGEKGDTGDEGYRGLPGPPGFRGLSGPDGLKGNRGQPGLPGPRGREGPQGFVGDTGEEGR
EGISFSGDPGVPGLPGSSGLRGPAGDSAVGPSGPIGFPGRPGPQGPKGVPGPPGINGLEG
LPGLAGAAGVKGQRGQDGAPGITGPQGLTYNSCDAGKPGSRGLLGPLGPVGPPGFYGEKG
EIGEGGPPGFGPQGPPGSPGSPGLPGYLGPQGSPGPDGDSGLPGLDGTKGLTGLVGHDGG
PGGSGRTGILGAPGRIGERGFNGRDGGPGCEGRKGEKGCEGVPGPPGETKVVQIKGGRGK
QGTSGINGFPGARGSKGVRGAAGKPGFGGINGPSGIVGLPGPDGPFGPPGSPGPPGRNGP
PGFIGFPGETGDPGDLGRPGKKGESGHQGCPGPKGDKGESISSIGPPGDKGPPGDKGPLG
SPGPPGDPGRVGFIGSPGPRGCKGDPGDQGELGPTGVMGPTGPRGRSGFPGLPGKVGADG
LPGPPGFHGLPGPPGPLGLHGLDGLKGVKGDMGTRGLGEAGPPGFIGLPGEKGPPGPPGY
SGSSSPGPPGPKGPLGPTGPPGNIGPPGKSGPDCNVLIPGPRGDPGPLGEDGEPGCVGEI
GDPGQNTPLSGDVGDNGYLGCEGPGGPQGLQGPRGLPGQPGGPGEKGTRGSTGLMGISGP
QGPKGCTGPGGTTGPKGPTGLVGPKGEMGRVLSCFPQSPAPPGPPGPPGPDGNVGIEGVF
GQIGPKGQNGDFGSEGLIGIKGVPGIDGGRGGPGRPGEDGVLGAKGYSGRMGDPGLPGPI
KNLNSGFLLVLHSQSNVIPSCPVDMRVLWDGYSLLYLEGQEKAHTQDLGQAGSCMRVFST
MPFSSCNMGTCSYASRNDKSYWLSTTAAVPSLPVGGASIKEHISRCVVCEAPSSPVTLHS
QTSDQPDCPPHWRSLWTGYSFLMHTGAGDEGGGQSLTSSGSCLTDFRAQPFVECQGPRGT
CHYFANIYSFWLTRVEATASAYEQGSSTTLMEGWQQRESIGRCTVCMRK
NT seq
5010 nt
NT seq
+upstream
nt +downstream
nt
atggaggacaagatgctgccgactttctgctccgccccctgcggctccacctggctctgg
tgcctcctgatggtcctgacggctctgctccctgctctcgggggcgacctcaacgagatg
tgtgccggcagggactgctccacctgtcagtgtttccccgccaaaggagcaaggggttct
ccgggccctctggggcagcagggtcctcaggggcctctgggcttcccaggccctctgggg
cctctgggacagaagggcgacagaggagacgaggggccgatggggggcagaggaccgaag
ggagacgtgggaagcattggcgttcccggttttcctggtttggaaggaatcccgggtcac
ccgggtccggctggaggtcctggttttccgggtctggacgggtgtaacgggaccagagga
gagagaggagaccctggacttccaggagaaaccggacccgacggagaaccgggttctgaa
ggactgaaagggttcccaggagatccagccgtcgactttttacagtacccaggagtacct
ggagacgttggttccgctggacctccgggtcgtcagggggaaccaggtctccccgggccg
gttgggtttcggggtccatcgggaccagatggaaccaacggttacccgggtcggcctggc
tccaggggtccacctggagaaagaggtcgttctctgcctggacagaaaggagacgagggg
tatcagggtctccaggggcaaccaggtccatttgagtacgtcgaccctccagaagaccgg
tacctcaaaggagataagggttctcaggggcctaaaggagtctgtggaaggcaaggaatg
tcgggtttggacggtctcaccgggatcaaaggggagaaagggattgtgggatttccaggt
tccagggggttttcaggtaaccctggtcgtcccggagaaagaggattcaaggggattcaa
gggagtccgggtcttccgggtctgattggtcgagatggtccaaagggcatgctgggaaat
ccaggtcccaaaggcctccccagggacgtggacgtaacacactcaggtgacatcggagat
cccggggcccccggaccaaggggccctccaggagacatcggaccaataggaatccagggc
cgcaccggagcccgtggcaggtccatacccggtccggcgggcgccgtgggtccgagggga
gctccaggatgcaaaggggacaaaggagatccgggtcaggtgtaccaatgcgtacccacg
cctggagaacctggaaaaccgggtttttctggcataaaaggaatgaaaggacaacagggg
tttccaggtacttactgtgtgcccgggaccctgggagaatctggggatccaggtgatcag
ggtccaaagggggcccaagggtttccaggaatcaaaggtagccacggcgactgttcttgt
ggtccaccagacaaactgatgggccctcccggcagagtgggtgaccccgggtcttcaggg
tttcctggacctccgggggccccggggctgagaggagacaatggttttcccggagacacg
ggagaaagtggaccgcagggtctgggtggatatccaggtgtcaacgggttcaaaggtcaa
aagggggatttcagtgtggtggattttaaaggtgagaaaggaaaccggggccagtcggga
cctgtaggccaacaggggtttttagggagaagaggacttgacgggccccaggggacccca
ggagaccccggccctgagggagaaagtcatgtgagttctcctggagatagaggcctccct
ggacttcgagggccaaagggcttgtcaggagcttctgggcccccgggtcagggtatagtt
ggagcattaggacagcgtgggggccccggggacccgggaccaactggcttcccaggggcc
ccaggaccgaagggggtaagaggggacaatctgccctgtgtgcccagaaaccccggcccc
ccgggagagaaaggagacactggagatgaaggttacagagggctgccaggtcctccaggg
tttcgtggcctcagtggacctgatggacttaaaggtaacagaggtcagcctggactgcct
ggaccacgtggacgcgaaggacctcaaggttttgttggtgacaccggagaagaaggacgt
gaaggcatcagctttagtggagatccaggtgttccggggctccccggctcttctggactc
agaggcccagcgggtgactctgctgttgggccctcaggacccattggctttccaggacga
ccgggccctcaaggacctaaaggggtccccggccccccagggatcaacggactggaagga
ctccccggtctggcaggggccgccggtgtcaagggccagagaggacaggatggggcaccg
ggtataaccggccctcaggggctcacatacaactcctgtgatgcagggaagcctggttcc
aggggccttttaggccctctaggacctgtaggacctccaggtttctatggggagaagggg
gagattggcgaggggggtcctccgggttttggccctcaaggccctccaggttcaccgggt
tctccgggtttgcctggttacctggggccacagggctcaccgggtcctgatggagactct
ggactgcctgggctggacggtacgaaaggtctgacagggctggtgggccatgacggaggc
ccggggggctctggacggaccgggatcctcggagctccgggaaggattggggagagaggg
ttcaatggacgagacggaggtcccggatgtgagggccggaagggagagaagggctgtgaa
ggggtcccggggccaccgggagagaccaaggtggtccaaatcaagggagggagaggaaaa
caaggaacgtctggcatcaatggctttcctggagctcgaggaagtaaaggtgtgcgagga
gctgctggtaagccgggttttgggggcattaacggaccctcgggcatcgtaggactccca
ggacccgatggtccgttcggaccaccaggatctccaggaccacccggacgcaatggtcca
cctggattcatcggcttcccaggagaaaccggagatccgggtgacctgggacgtccgggg
aaaaaaggagaatctggtcaccaaggatgtcctggacctaaaggtgataaaggagagtcc
atcagtagtatcggtccacctggagacaaagggcctcctggagacaaagggcccttagga
tctcctggacctccaggagatccaggtagagtcggtttcattgggtctccggggccgaga
gggtgcaaaggagatccaggggatcaaggggaactgggcccaacaggtgtaatgggcccc
actggtcccagaggccgttcaggttttccaggtctacctggtaaagtcggtgctgatggt
cttcctggacctccaggcttccatggtctcccaggtcctcccggaccgctcggtctccat
ggacttgacggactgaaaggagtaaagggggacatggggaccagaggtctgggtgaagcg
ggccctcctggttttattggtcttccgggggaaaaaggtcctcctggtccaccgggatac
agtggttcatcctcaccaggcccaccaggaccaaagggccccttaggacctacagggccg
cctgggaatataggacctccgggtaaatccggaccggactgcaacgttctgatcccgggg
cctcgtggagatcctggtcctcttggagaagacggagagccagggtgtgtcggtgaaatt
ggtgatccaggtcagaacactccgctatctggtgacgtcggggacaacggatacctggga
tgcgaggggcctggaggcccacagggacttcaggggccaagaggactgccaggacagccc
ggaggtccaggagagaaaggtacgcgggggtccactggtctgatgggaatctctgggcct
cagggtcctaaaggctgtactggacctggtggaactactggaccaaaggggccaaccgga
ttggtgggtccaaagggggagatgggacgagtcttgtcctgtttccctcagtccccagcg
ccgccggggccacccggccctccaggcccagacgggaatgttggcatagagggagtgttc
ggccaaatcggacccaaaggtcagaacggggacttcggatctgaaggactgataggcatt
aaaggggtccccggtatagatggtggacgaggaggcccgggccggccgggggaagacgga
gtccttggagccaaaggttattctggtcgaatgggggaccctgggctgcctggacccatc
aagaacctgaactcgggcttcttgctggtgttgcacagccaatcaaatgtaattccctcc
tgtccagtagacatgagggttctgtgggacggatacagtctgctgtacctggaaggtcag
gagaaagctcacactcaggacctgggtcaggcaggttcttgcatgcgggtcttctccacc
atgccgttctcctcctgcaacatgggaacctgctcctacgcaagtcgcaacgacaaatcc
tattggctgtccacaacggcggccgtccccagcctgccagtgggcggagcctccatcaag
gagcacatcagccgctgtgtagtgtgcgaagccccctcctcaccggtcactctgcacagc
cagacctcagaccagccagactgccccccccactggaggagcctgtggaccggatattct
ttcctaatgcacacaggagccggcgatgagggcggcggccagtctctgacatcatcagga
agctgcctgacggacttccgggcccagcccttcgtggagtgtcaaggccctcgaggaacc
tgccactacttcgccaacatctacagcttctggctcaccagggtggaggccaccgcctcg
gcctacgagcagggctcctccaccacgctgatggagggctggcagcagagggagagcatc
gggaggtgcacagtctgcatgaggaagtaa
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