Pungitius pungitius (ninespine stickleback): 119195737
Help
Entry
119195737 CDS
T07626
Symbol
lrrc4ca
Name
(RefSeq) leucine rich repeat containing 4C, genome duplicate a
KO
K07523
netrin-G1 ligand
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
119195737 (lrrc4ca)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ppug04515
]
119195737 (lrrc4ca)
Cell adhesion molecules [BR:
ppug04515
]
Immunoglobulin superfamily
NGL family
119195737 (lrrc4ca)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
ig
Ig_3
V-set
LRR_14
LRR_9
Ig_2
LRRNT
Ig_6
Sp38
Syndecan
Motif
Other DBs
NCBI-GeneID:
119195737
NCBI-ProteinID:
XP_037306819
LinkDB
All DBs
Position
6:complement(1293464..1330014)
Genome browser
AA seq
648 aa
AA seq
DB search
MLNKMTSSQQQQMMRGPRWNRALSDPFFVLLLALQLLVVAGLVRAQTCPSVCSCSNQFSK
VICTRRGLRDVPDGISTNTRYLNLQENLIQVIKVDSFKHLRHLEILQLSKNHIRKIELGA
FNGLASLNTLELFDNRLTTIPNGAFEYLSKLKELWLRNNPVESIPSYAFNRVPSLRRLDL
GELKRLSYISEGAFEGLSNLRYLNLGMCNLKEIPNLIPLVRLDELEMSGNQLAVIRPGSF
KGLIHLQKLWMMHAQIQTIERNSFDDLQSLVELNLAHNNLTLLPHDLFTPLHHLERVHLH
HNPWNCNCDILWLSWWLKEMVPANTSCCARCSSPTHHKGRYIGELDQNHFHCYAPVIVEP
PADLNVTEGSAAELKCRASSLTSVSWITPNGSIMTHGAYKIRISVLTDGTLNFTNVTMQD
TGTYTCMVSNSAGNTTASATLNVSSTENSSFSYFTTVTVETIESPHNEAFTIAVQQKVGP
TPSAGTWESVSPTSTTTTTVRTPLYTRTTEKTYTVPVTELVGNGPLNGLDEVMKTTKIII
GCFVAITLMAAVMLIIFYKMRKQHHQQNHHAPTRTIEIINVDEDCVTGGQGMEGHLTLPP
LEHEHLNHYNAYKTAYNHVSTINSLHSSAHEPLLIRASSKDNVQETQI
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgttaaacaagatgacctcctctcagcagcagcagatgatgcgaggtcctaggtggaac
cgggccttgtccgaccctttttttgtgctgcttctggccctccagctgctggtggtggca
gggctggtgcgtgcgcagacatgcccctctgtctgctcctgtagcaaccagttcagcaaa
gtcatctgcacccggcgaggcctgcgagatgtccctgatggcatttctaccaacacccga
tacctgaacctgcaagaaaacctaattcaggtgataaaggtggacagtttcaagcactta
agacatctggagattctccagctgagcaaaaaccacatacgcaaaattgagttgggggcc
tttaatggactggccagcctcaataccttggagctttttgataaccgcctcaccactatc
cccaacggggcatttgagtacctgtccaaactaaaggagctttggctgaggaataacccc
gtagagagcattccctcctatgctttcaacagagtgccctcattacgccggttggacctt
ggggagctcaaacggctctcctacatatctgagggtgcctttgaagggctgagcaatctg
cgctacctaaatctgggaatgtgtaatctgaaggaaattcccaatctcattcccctagtg
aggctggatgaactggagatgtcagggaaccagctcgcagttatccgacctggctctttt
aaggggctcatccatttgcagaagctatggatgatgcatgctcaaatccagacaatagaa
aggaactcttttgatgacctgcagtcactagtggagctcaatctagcccataacaatctt
acccttttgccccatgatctcttcactcctttacatcacctggagagggtacacttgcac
cacaacccgtggaattgtaactgtgacatcctctggctcagctggtggctgaaggagatg
gtaccagctaacaccagctgctgtgcccgttgcagctcaccaacccaccacaaaggacga
tacattggcgagctggaccagaaccactttcactgttatgctcctgttattgtggagcct
cctgcagatctaaatgtgacagaaggaagcgctgcagagttgaaatgcagagccagctct
ttgacgtcggtaagctggattacacccaatggttccatcatgacacacggagcttacaaa
atcagaatatctgtgcttaccgatggcaccctgaactttaccaacgttaccatgcaggac
accggcacatacacgtgtatggtcagtaattctgcaggaaacacaacagcatctgccacg
ctcaatgtgtcctccactgagaacagcagcttcagctacttcaccacagtgacagtggag
acaatagaatcaccacacaatgaagccttcaccattgctgtgcaacagaaggtggggccc
accccttcagctggtacatgggagtctgtttcgccaacctctacaacaaccacaacagtc
cggactcccctctacacccgcaccacagagaagacttacacagtcccagtcacagaactg
gttgggaatggtccactgaatggtttggatgaggtcatgaagacaaccaagatcatcatt
ggctgttttgttgcaatcacactcatggcagcagtcatgttgatcatcttttacaagatg
cgtaaacagcaccaccagcagaaccaccatgcacccacacgcaccattgagatcatcaat
gtggacgaggactgtgtaactgggggccagggcatggaagggcacctgaccctgcctcct
cttgagcatgagcacctcaaccactacaacgcctacaagactgcatacaatcatgtctcc
actatcaactctctacacagttcagcccacgaacctttgttaattcgggccagctcaaaa
gacaatgtacaggagacccaaatctaa
DBGET
integrated database retrieval system
