Pungitius pungitius (ninespine stickleback): 119195817
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Entry
119195817 CDS
T07626
Name
(RefSeq) transcription factor SOX-6-like isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ppug03000
]
119195817
Transcription factors [BR:
ppug03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
119195817
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
AAA_23
Motif
Other DBs
NCBI-GeneID:
119195817
NCBI-ProteinID:
XP_037306985
LinkDB
All DBs
Position
Unknown
AA seq
758 aa
AA seq
DB search
MMSSIRATPPFHPQSEEEEAMGHDHAATWTSEEREGPKETPPPHPDELLPIREKLADSAW
GGVVPAAMDNESSKGGSLYSYRTNSTSPPKPEEGSRERGEPVAGLVFGTPERRKGSLADV
VDTLKQKKLVELTKTEQDEPSCMERLLSKDWTERVDRLKADELLGEVEGTPESLEEKEHQ
LSTMIGQLISLREQLLSAHDEQKKMAASQLEKQRQQMELARQQQEQIGRQQQQLLQQQHK
INILQQQIQVQGHMPPLMIPVFPHDQRSLAAAAAAQQGFLFPPGLSYKPAGDNYPMQFIP
STMAAAAASGLSPLQLQQLYAAQLASMQLSPGAKMAPLPQANNSPGPLSPSALKSEKRAC
SPMPNIKEEATTQPLNLSARPKQAEPLRSPTPPTHGLYPGSRSSPTAGGKGRIPSPMAHV
SRNTSLDILSSLNSTALFGDQDAVMKAIQEARSMREQIQREQLHHQQHPQHPGHHSLEAK
LSALSSMSLNNGNKERLHYETLSQHLGKLGEDAGKMVHRVIDLTRPEDLDGSSITEARVF
REARGRSNAEPHIKRPMNAFMVWAKDERRKILQTFPDMHNSNISKILGSRWKGMTNQEKQ
PYYEEQARLSKIHLEKYPNYKYKPRPKRTCIIDGKKLRIGEYKQMMRSRRQEMRQFFVGP
QPPMPLGSSPGGVYPGAITMATATTSPHLTSDCSSNSASPEPAVPVIQSAYGMKAEPGLP
GRDPANGDDDMDMYEDFEDEPKSDYSSDRETREALSAN
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcttccatacgagcaacacctccctttcacccacagtctgaggaggaggaagcg
atgggtcacgaccacgcggccacgtggaccagcgaggagcgggagggcccgaaggagacg
ccgcccccccacccggacgagctgctgccaatcagggagaagctggcggactcggcgtgg
ggcggcgtggtgccggctgcgatggacaacgagagcagcaaaggcggctcgctctactcc
taccggaccaactccacctctccgcccaagccggaggagggctccagggagcgcggggag
cccgtggccggcctcgtcttcggcacgccggagcgccgcaagggaagcctggcggacgtg
gtggacacgctgaagcagaagaagctggtggagctgaccaagacggaacaagacgaaccg
agctgcatggagcggctcctctcaaaggactggacggagcgcgtcgaccgcctcaaggcc
gacgagctgctcggggaggtcgaaggcacgccggagtcgctggaggagaaggagcaccaa
ctgtccaccatgatcggtcagctgatcagcctgagggagcagctcctctccgcccacgac
gagcagaaaaagatggccgcctcacagctggagaagcagaggcagcagatggagctggcc
aggcagcagcaggagcagatcggcagacaacagcagcagctcctgcagcagcagcacaag
ataaacattctgcagcaacagatccaggtccagggtcacatgccccctctgatgatcccg
gtgtttcctcacgaccagcgctctctggccgccgccgccgccgcgcagcagggcttcctc
ttcccgccgggcctgtcctacaagccagcaggcgacaattaccccatgcagttcattcca
tccacaatggcagctgcagcggcgtccggactcagccctttgcaactgcagcagctgtat
gccgcccagctggccagcatgcagctctcaccgggggccaagatggctcccctgccgcag
gccaacaactccccgggccccctgtccccctccgcgctgaagagcgagaagcgagcatgc
agccccatgcccaacatcaaggaggaggcgaccacgcagccgctgaacctgtcagcccga
cccaagcaggcggagcctctgcgctccccgacccccccgacgcacggcctgtaccccggc
agcaggtccagccccaccgccgggggcaagggccgcatccccagccccatggcccacgtg
agcaggaacacctcgctggacatcctgtccagcctcaactccacggcgctcttcggggac
caggacgccgtgatgaaggccatccaggaggccaggagcatgagggagcagatccagagg
gagcagctccaccaccagcagcacccgcagcacccggggcaccacagcctggaggccaag
ctgtcggccctcagcagcatgagcctcaacaacggcaacaaggagcgactgcactacgag
acgctgagtcagcacctggggaagctgggggaggacgccgggaagatggtgcatcgagtc
atcgacctgacgaggccagaagacctggacggcagcagcatcacggaggcgcgggtgttc
agggaggcgcggggcaggagcaacgccgagccccacatcaagaggcccatgaacgccttc
atggtgtgggccaaggacgagaggaggaagatcctgcagactttccccgacatgcacaac
tccaacatcagcaagatcctcggttctcgctggaaaggcatgaccaaccaggagaagcag
ccgtactacgaggagcaggcccgcctgagcaagatccacctggagaagtaccccaactac
aagtacaagccgcggcccaagaggacctgcatcatcgacggcaagaagctgcgcatcggg
gagtacaagcagatgatgcgctcgcggcgccaggagatgaggcagttcttcgtggggcct
cagccgccgatgcccctcggcagcagccccggaggagtttaccccggcgccataaccatg
gcgacggccacgacgtccccacacctgacctcggactgctccagcaactcggccagcccc
gagccggccgtccccgtcatccagagcgcgtacgggatgaaggccgagccgggcctgccg
ggccgcgaccccgccaacggagacgacgacatggacatgtacgaggactttgaggacgag
cccaagtcggactatagcagcgaccgcgagacgcgggaggccctcagcgccaactga
DBGET
integrated database retrieval system
