Pungitius pungitius (ninespine stickleback): 119195951
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Entry
119195951 CDS
T07626
Symbol
ighmbp2
Name
(RefSeq) DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ppug03009
]
119195951 (ighmbp2)
03012 Translation factors [BR:
ppug03012
]
119195951 (ighmbp2)
Enzymes [BR:
ppug01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
119195951 (ighmbp2)
5.6.2.5 RNA 5'-3' helicase
119195951 (ighmbp2)
Ribosome biogenesis [BR:
ppug03009
]
Eukaryotic type
Other ribosome biogenesis factors
119195951 (ighmbp2)
Translation factors [BR:
ppug03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
119195951 (ighmbp2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_30
AAA_19
zf-AN1
ResIII
DEAD
Viral_helicase1
IstB_IS21
Helicase_RecD
nSTAND3
AAA_22
AAA_16
UvrD-helicase
SLFN-g3_helicase
ABC_tran
Flavi_DEAD
DnaB_C
PhoH
NPHP3_N
AAA_25
SRP54
AAA
Zot
ATPase
AAA_31
NTPase_1
AAA_28
UvrD_C_2
Motif
Other DBs
NCBI-GeneID:
119195951
NCBI-ProteinID:
XP_037307190
LinkDB
All DBs
Position
6:15574947..15581249
Genome browser
AA seq
998 aa
AA seq
DB search
MAVEKFVSKTLELLQEEREAEIEETRIWQENVSLKDLQNKGVCLLKLQIGSQSTGLYGRT
VIILEPRKYLGFSSLPSNSFGPGDIVGLYDTGGCTPASQIGTGIVTRVSQASISVAFDDS
KDGLRFDTDALHNLLKLANDVTYKRMKNALNTLNGYSHGPAANLINVLFGDSKPSHQSQP
NEVKYFNSNLDDSQREAVSFTLSQRELAVIHGPPGTGKTTTVVEIILQAVKQGQKVLCCA
PSNVAVDNLVERLARCKAKVLRLGHPARLLESIQKHSLDAILAQSDNAHIIADIREDIDK
AFIGMKKMREKGERVNFKREIGELRKELKLREATAMAQILKRADVVLSTNTGASRDGPLK
LLPEEHFDWVVIDECAQALESSCWIGLLRARKCVLAGDYKQLPPTIKSQKAASKGLSLSL
MERLIQMYGDSVVRMLTVQYRMNSAIMNWASKEMYQGRLTAHSSVERHLLKDLPGVSCVE
ETSTPLLLIDTAGCGLTEMEVTDEQSKGNQGEVDIVELHIKALIGAGVKAKDIAVIAPYN
LQVDLLRQKLSARHPELEIKSVDGFQGREKEAVVLSLVRSNRKGEVGFLAEDRRINVAIT
RARRHVAVVCDSQTVQSHAFLKSLLVHMTQCGEVRTAFEYIQDIVPQNYTRDHKDTRANA
SAGSATATKQKVRDQSKQQQKKSPGSCANKNAAATEERTKSSSTALTEEEQKKNRCAEIR
AQVEGFLKDLSRMELQFPPSFNSHDRLLVHQIAEELGLVHESKGEAKERCVSVCRPPASA
PAQRPPRGGGGEEEEVVVVRKDEGAQEESIPNPQREPLCQPPLDLKRLHLERMQREQQKR
DEHAQQKKQQINFPPAQSSKKPKSAKGKTRVKTGACGIAAAAAPDDDFDTLINAVIKADS
VCSFVKCKASVRTLGQLCLFCNRQYCLSHHIPEVHGCGDEAKSHARMRISKEGVLYAGSG
KKDKSMDPNKKAYLQRKLDSKLKDMSSQRKPKTKENDS
NT seq
2997 nt
NT seq
+upstream
nt +downstream
nt
atggcagttgaaaagtttgtgtcaaagaccctcgagcttctacaggaggagagagaggcg
gaaatcgaggagaccaggatatggcaggagaacgtctctctcaaggatcttcaaaataaa
ggagtttgcctgctgaaattgcagatcgggagtcagtccacgggcctgtacggtcgcacg
gtaatcatccttgagccgaggaagtatctaggtttctcctctctgccaagcaacagcttt
ggacccggggacatagttggcttgtatgacaccggtggatgcaccccagcctcacagatc
ggaacaggaatagttacgagggtcagccaggcgtctataagtgtggccttcgacgattcg
aaggatggcctcaggtttgatacggatgcgcttcacaacctcttaaagttggcaaatgat
gtcacctacaaacggatgaaaaatgccttgaatacactgaatggatacagccatggacca
gctgccaatctgattaatgttctttttggagactcaaaaccatctcatcaatcacagcca
aatgaagttaaatactttaactccaacctggatgactctcagagagaagcggtgtccttt
acgctgtctcagagagaactggctgtaattcatggaccaccaggcactgggaaaaccacc
acagtggtggagatcatcctgcaagcagtgaaacaaggccaaaaggtcctctgctgtgcg
ccctccaacgtggccgtggataacttagtggagaggttggcccggtgcaaagcaaaggtc
ctcaggctgggtcaccctgccagacttctggagtccatacagaaacattcgctggacgcc
atcctcgcgcagagtgacaacgcccacatcatcgctgatatccgtgaagacatcgataaa
gcatttattggaatgaagaaaatgcgtgaaaaaggagagcgggtgaacttcaaaagagaa
ataggggagcttagaaaagagctgaagttgagggaagcgacggccatggcacagatcctg
aaacgtgctgatgttgtgttatcgaccaacacaggtgcgtcgagagatggccccctgaag
ctcctgccggaggagcattttgattgggtggtgatagacgagtgtgctcaggcgctggag
agcagctgttggatcgggctgctcagagcacgcaagtgtgtcctggctggagactacaag
cagttaccacctactatcaaatcacaaaaggctgcatcgaaagggctgtctctcagcctc
atggagagactcatccagatgtatggcgactccgtggtccgtatgctaacagttcagtac
cgcatgaacagtgccatcatgaattgggcctccaaagagatgtaccagggacgactaaca
gctcacagctctgtggagagacacttgctgaaagatttaccaggagtctcctgtgttgaa
gagaccagcacgccacttcttcttattgacactgcaggctgcggtctgactgagatggag
gtcactgatgagcagtccaaaggcaatcagggtgaggtagacattgttgaactgcacata
aaggccttgattggagctggagttaaagctaaagacatcgctgttattgctccatacaat
ctacaggttgatcttctgcgtcagaaactttctgcgaggcatccagagctggagataaag
tctgtcgatggattccagggccgtgaaaaagaggctgtggttctgtcgttggttcggtcc
aacaggaagggggaagttggatttcttgcggaggacagaaggatcaatgtggccatcacg
cgcgctagacgtcacgtcgctgttgtgtgcgacagccagactgtgcagagtcatgctttc
ctcaagtctctcctcgttcacatgacccagtgtggcgaagtgagaacggcattcgagtac
atccaagacatcgtgccacagaactacacccgtgaccacaaagacacgagggccaacgcg
tctgccggcagcgccaccgccaccaaacagaaggtcagggatcagtcgaagcagcaacag
aagaagtccccgggtagctgcgctaataaaaatgctgccgccacagaggagcgcacaaag
tcctccagcacagcgctgacggaggaagagcagaagaagaacagatgcgctgagatcaga
gcgcaggtggagggctttctaaaggacttaagtcggatggaactacagttcccaccatcg
tttaactctcacgaccgcctactggtgcaccagatcgctgaggagctgggcctcgtgcac
gagagtaaaggtgaagctaaagagaggtgtgtctctgtctgcaggccgccggcgtcggcc
cctgctcagaggccaccgcgaggaggaggaggagaagaagaagaagtagtagtagtaaga
aaagatgagggagctcaggaagaaagcattcccaatccccaaagagaaccgctgtgccaa
cctccattagacctgaagcggttacatttggagcggatgcagagggagcagcagaagagg
gacgaacacgctcaacaaaaaaagcaacagatcaacttcccgccggctcagtcgtcaaag
aagcccaaatccgctaaaggaaagacccgagtgaagacgggcgcatgtggcatcgccgcg
gccgccgctccggacgacgacttcgacacactcatcaacgccgtcataaaggctgacagc
gtgtgcagctttgtcaagtgcaaagcttctgtgcgaacgctcggacagctttgcctgttc
tgcaacaggcagtactgcctgagtcatcacataccggaggttcacggctgtggggatgaa
gccaagtctcatgctcggatgagaataagcaaagaaggcgttctgtacgcaggaagtggg
aagaaagacaaatccatggaccccaataaaaaagcctatctgcaaaggaaactggactct
aaattaaaagatatgtcatcgcagaggaaaccgaaaaccaaggaaaatgacagttag
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