Pungitius pungitius (ninespine stickleback): 119196032
Help
Entry
119196032 CDS
T07626
Symbol
rag1
Name
(RefSeq) V(D)J recombination-activating protein 1
KO
K10628
V(D)J recombination-activating protein 1 [EC:
2.3.2.27
]
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug04068
FoxO signaling pathway
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09130 Environmental Information Processing
09132 Signal transduction
04068 FoxO signaling pathway
119196032 (rag1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ppug04121
]
119196032 (rag1)
Enzymes [BR:
ppug01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
119196032 (rag1)
Ubiquitin system [BR:
ppug04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
119196032 (rag1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RAG1
RAG1_imp_bd
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_4
zf-RING_10
zf-RING_UBOX
zf-C3HC4_3
zf-RING_2
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
119196032
NCBI-ProteinID:
XP_037307294
LinkDB
All DBs
Position
6:1125070..1129101
Genome browser
AA seq
1069 aa
AA seq
DB search
MAEGSLETDGHRSSMPAELCHPHSKYSQWKFKLFRLKSMEKVPLPTETRPEEGAVTGISP
PAASNTEADNGTGSESVMKLCLGGKSKEIVEGPGRRVDVKLQEMDTHMNQLRCLCRLCGM
ALRTVKGPVHDVNGDLDEVSKGALRKMGCKFTGWPDVVLKVFKVDVKEDTESVHPLSFCH
RCWVVIIRGGGFCSFSRTRVPEWKPHSSTCNLCSPRKPSFQRTGRKRRKAIPRVQSLAKR
TRRDPGDCIVVGERKALRPFGDNHHGPMLRASIQREHWVKNITHCQTDHLSTKLISEKLP
VDFLHSFTCRVCDHLLSDPVQSPCRHLFCRGCILKYNRVLGPHCPACNMSCSVDELAPPA
KGFLSALHSLSLLCPTGGCGKEFRLDSFKAHSRGHDVDEQDDKQRPPAPDSYALTNKGGR
PRQHLLSLTRRAQKHRLRDMKNQLKAFADKEEGGDLRSVCQTLFLLALRSGNEHRRADEL
EAMMQGRGFELHPAVCLAIRVNTFLSCSQYHKMYRTVKATSGRQIFQPLNTLRAAEKGLL
PGFHPFEWQPALKNVSTSCTVGIINGLSGWASSVDDFPADTITRRFRYDVALVSALKDLE
EDLLEGLRESGMEDSACTSGFSVMIKESCDGMGDVSEKHGGGPPVPEKAVRFSFTVMSIS
VLADGEGDEVTIFTEPKPNSELSCKPLCLMFVDESNHETLTAVLGPIVAERNAMKESRLI
LSVGGLPRSFRFHFRGTGYDEKMVREVEGLEASGSTYVCTLCDSTRAEASKNMVLHSITR
SHEENLDRYEIWRTNPFSESVDELRDRVKGVSAKPFMETQPTLDALHCDIGNATEFYKIF
QDEIGEMYQKVNPTREERRSWRAALDKQLRTKMKLKPVMRMNGNYARRLMTQEVVEVICE
LVPSEERREALRELMRLYIQMKPVWRATCPAKECPDQLCRYSFNSQRFADLLSSTFKYRY
NGKITNYLHKTLAHVPEIIERDGSIGAWASEGNESANKLFRRFRKMNARQSKAFELEDVL
KHHWLYTSKYLQKFMEAHKDSAKALQATIDPEASQESENMFSSLEVDDF
NT seq
3210 nt
NT seq
+upstream
nt +downstream
nt
atggcagaggggagcctggagacagacggccacagatcctccatgccggctgagctctgc
catccccactctaagtactctcagtggaagttcaaactgtttaggctgaagtccatggag
aaggtgcctttgcccacagagactcggcccgaagaaggggccgtgacagggatttctcct
cctgcagcttcaaacacagaggctgacaatggcacgggttcagagagtgttatgaaattg
tgcctagggggaaaaagcaaggaaattgtggagggccctggccggagagtcgatgtgaag
ctgcaggaaatggacacccacatgaaccaactcaggtgcttgtgtcgtctgtgtggaatg
gccctgagaacagtcaaaggtccggtgcatgatgttaatggggatctggacgaggtcagc
aaaggcgctttgcgtaaaatgggctgcaagtttacaggctggccagacgtcgttctcaaa
gtctttaaagtggacgtgaaggaggacacagaatctgttcacccgctttccttctgccat
cgctgttgggtggtaatcataagaggagggggcttctgtagcttctccagaacaagagtc
cctgagtggaaaccccactcttccacctgcaacctttgctcccccaggaaaccttcattt
cagcggacagggaggaagaggcgcaaagccattcccagagtgcagagtctggcaaagagg
accaggagggaccccggcgattgcattgttgtcggtgagaggaaggctctcaggccattt
ggagacaatcatcatggtcctatgctaagggccagtatccagagagagcactgggtgaag
aacatcacccactgccagacagaccacctgagtaccaagttaatctccgagaagctcccc
gtggacttcctccattctttcacctgccgggtgtgcgaccacctgctctctgatccggtg
cagtctccctgtagacacctcttctgccgcggctgtattttaaaatacaaccgtgttctg
gggcctcactgcccggcctgcaacatgtcttgctcggtcgatgaactcgctccgcccgct
aaaggcttcctgtcggcgctgcattccctgtctttgctctgccccacgggcggctgtggc
aaggagttcaggctggactcgttcaaagctcatagtcgcggccatgatgtggatgaacag
gacgataagcagcggccaccggcgcctgacagctacgcgctgaccaacaaagggggaaga
cctcgtcagcacctgctatcgctgacccgccgtgcacagaagcatcggctgagggacatg
aagaaccagctgaaggcgtttgcagataaagaggaggggggcgacctgaggtctgtgtgt
cagaccctgtttctgctcgcactgaggtctgggaatgaacaccgtcgggcagatgagctg
gaggccatgatgcaaggaagaggctttgagttgcatcctgctgtgtgcttagccattcga
gtcaacactttcctgagctgcagccaatatcacaagatgtaccggactgtcaaagccacc
agcggccgccagatctttcagcccctgaacaccctgcgggctgcagagaaggggcttctg
cctggctttcacccctttgaatggcaaccagcactcaagaatgtgtctacatcttgcacc
gttggcattattaatgggctctctggatgggcttcctctgtggatgacttcccagctgac
accatcacgcgacggtttcggtacgatgtggctctggtgtcggcattgaaggatctggag
gaggacctcctggaggggttgagagagagcggcatggaagacagcgcttgcacctccggc
ttcagcgtcatgatcaaggaatcctgtgacggcatgggggatgtcagcgagaagcacggc
ggaggaccacctgttcccgagaaggctgtgcgtttttcatttactgtcatgtccatctct
gtgctggcagacggcgagggggatgaggttaccatcttcaccgagccaaagccaaactca
gaactgtcctgtaagcctctgtgcttgatgtttgtggatgagtccaaccacgagacactc
acagctgtcctggggccaatagttgcggagcgcaacgcaatgaaagaaagccggctcatt
ctctccgtgggcggactacctcgctccttccgctttcacttcagaggcacggggtatgat
gagaagatggtgcgcgaggtagagggcctggaggcgtcagggtccacctacgtctgcact
ctttgtgactccactcgggcagaggcctctaagaacatggtgctgcactccatcactcgc
agtcacgaagagaacctggatcgttacgagatatggagaaccaacccgttttctgaatct
gtggatgagctgcgcgacagagtcaaaggggtctctgccaaacccttcatggagacccag
cccacgctggatgcgttgcactgtgacatcggcaacgccactgagttctacaagatcttc
caggacgagatcggggagatgtaccaaaaggtcaacccgactcgggaggaacggcgaagc
tggagggcggcgctggacaaacagctccggacgaagatgaagctcaaaccggtgatgagg
atgaatgggaactacgcccgcaggctaatgacccaagaggttgttgaggtgatttgtgag
ctggtgccctcagaggagaggagggaggccctgagggaactgatgaggctctacatccaa
atgaagcccgtgtggcgcgccacctgccctgccaaggagtgccccgaccagctgtgccgc
tacagcttcaactcccagcgctttgccgaccttctctcttctaccttcaagtacaggtac
aatggaaagataaccaactacttgcataagactttggcccacgtgcctgaaatcatagag
agagatggatcaataggagcctgggccagcgaggggaacgagtcagccaacaagcttttc
aggcgtttccggaagatgaacgcgcgtcagtcgaaggcctttgagctcgaggacgtgttg
aaacatcactggctctacacctccaagtacttgcagaagtttatggaagctcacaaggac
tctgctaaagctctgcaagccaccattgacccagaagcaagtcaggagagtgaaaacatg
ttctcttctctggaagttgatgacttttga
DBGET
integrated database retrieval system
