KEGG   Pungitius pungitius (ninespine stickleback): 119196083
Entry
119196083         CDS       T07626                                 
Symbol
skic8
Name
(RefSeq) superkiller complex protein 8
  KO
K12602  WD repeat-containing protein 61
Organism
ppug  Pungitius pungitius (ninespine stickleback)
Pathway
ppug03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ppug00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    119196083 (skic8)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ppug03019]
    119196083 (skic8)
Messenger RNA biogenesis [BR:ppug03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     119196083 (skic8)
SSDB
Motif
Pfam: Beta-prop_WDR3_1st Beta-prop_WDR5 WD40 Beta-prop_THOC3 Beta-prop_EML_2 WD40_Prp19 WD40_WDHD1_1st Beta-prop_WDR3_2nd WD40_CDC20-Fz WDR55 WD40_Gbeta Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd EIF3I WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd ANAPC4_WD40 WD40_MABP1-WDR62_1st Beta-prop_WDR36-Utp21_1st Beta-prop_EML Beta-prop_WDR75_1st WDR90_beta-prop_4th Beta-prop_TEP1_C Beta-prop_SCAP Beta-prop_IFT122_1st Beta-prop_Aladin Beta-prop_RIG_2nd Beta-prop_ACSF4 Beta-prop_Vps41 Beta-prop_WDR35_TULP_N Beta-prop_WDR19_1st Beta-prop_VPS8 Beta-prop_EIPR1 Beta-prop_NWD2_C eIF2A WD40_RFWD3 Beta-prop_WDR41 Tricorn_2nd Beta-prop_SPT8 Beta-prop_Nup120_160 Beta-prop_HPS5 Ge1_WD40 Beta-prop_DCAF4 Beta-prop_IFT140_1st NBCH_WD40 Beta-prop_NUP159_NUP214 PROPPIN Cytochrom_D1 WDR54 Beta-prop_WDR75_2nd WD40_like WD_LRWD1 Beta-prop_IFT122_2nd VPS8_N Vgb_lyase Beta-prop_pof12 DUF2415 Nucleoporin_N
Other DBs
NCBI-GeneID: 119196083
NCBI-ProteinID: XP_037307396
LinkDB
Position
6:19789574..19794529
AA seq 305 aa
MSTQYSILFKQEHAHDDAIWTAAWGKSESDGSETIITGSLDDMVKVWKWSDEKLELQWTL
EGHQLGVVSVDISHNGAIAASSSLDAHIRVWDLDSGKQIKSMDAGPVDAWSVAFSPDSKH
IATGSHHGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG
KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAATLSGHGSWVLNVAF
SPDNTHFVSSSSDKSVKVWDAGTRACINTFFDHQDQVWSVKYNSKGSKIISAGDDRAIHI
YDCPM
NT seq 918 nt   +upstreamnt  +downstreamnt
atgagcactcaatacagcattctcttcaagcaggaacacgcacacgatgacgctatctgg
acagcagcgtggggtaaaagtgagtcggacgggtcagaaactatcatcaccggctcccta
gatgatatggtgaaagtatggaagtggtcagacgagaagctggagctgcagtggactctg
gagggccaccagctgggcgtagtgtcagtggacatcagccacaacggagccatcgccgcc
tccagctctctggacgctcacattcgtgtctgggacctggattctggaaaacagatcaag
tccatggacgctggaccagttgacgcttggtcggtcgccttctccccggactccaaacac
attgccacaggaagccaccatggcaaggtcaacatcttcggggtggagagtggcaagaag
gaatactccctggacacccgagggaaattcatcttgagcatagcttacagccctgatgga
aaatatttggccagcggagccatcgatggaatcatcaacatcttcgacatcgccaccgga
aagctactccacaccctggaaggtcacgccatgcccatcagatccctcaccttctccccc
gactcgcagctgctggtcacagcctccgacgacggctacattaaaatatacgacgtgcaa
cacgccaacctggcggccacgctgagcggacacggatcctgggttctgaatgtggctttc
tcccccgataacacccacttcgtctccagctcgtccgacaagagtgtgaaggtttgggac
gccggcaccagagcctgcatcaacactttcttcgaccatcaggaccaggtgtggagcgta
aagtacaacagcaaaggctcaaagatcatctcggccggagacgaccgcgccatccacatc
tacgactgtcccatgtga

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