Pungitius pungitius (ninespine stickleback): 119196086
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Entry
119196086 CDS
T07626
Symbol
roraa
Name
(RefSeq) nuclear receptor ROR-alpha A isoform X1
KO
K08532
RAR-related orphan receptor alpha
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ppug03000
]
119196086 (roraa)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
ppug03310
]
119196086 (roraa)
Transcription factors [BR:
ppug03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
119196086 (roraa)
Nuclear receptors [BR:
ppug03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
119196086 (roraa)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
119196086
NCBI-ProteinID:
XP_037307399
LinkDB
All DBs
Position
Unknown
AA seq
519 aa
AA seq
DB search
MESPPDPASDPGNSASEPATPARETPVNLETLRKAEHPAPVRRQTCSSTNRGISVTKKTH
TSQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNAAYSCPRQKNCLIDRTSRNR
CQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRLQQQQRDHQQQPGEAEPLTP
TYGLSANGLTELHDDLSGYMDGHTPDGSKPDSAVSSFYLDIQPSPDQSGLDINGIKPEPI
CDFAPGSGFFPYCSFTNGETSPTVSMAELEHLAQNISKSHMETCQYLREELQQMTWQAFL
QEEVESYQSKPREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVV
FVRMCRAFDSQNNTVYFDGKYAGPDVFKSLGCDDLISSVFEFGKNLCSMHLSEDEIALFS
AFVLMSADRSWLQEKVKVEKLQQKIQLALQHVLQKNHREDGILTKLICKVSTLRALCSRH
TEKLTAFKAIYPDIVRAHFPPLYKELFGSDFEQSMPVDG
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atggagtcccctccagatccagcgagcgacccgggcaacagcgcctcggagccggctacc
ccggccagggaaaccccggtaaacctggagacgctccggaaagcggagcacccggccccg
gttcgaaggcagacgtgttccagcacaaaccgaggtatctcagtaacaaagaagacgcat
acttctcaaatcgaaataattccctgcaagatctgtggagacaaatcatcaggcatccat
tacggcgtgataacatgtgaaggctgtaagggcttcttcaggaggagtcagcagagcaat
gcagcctactcctgcccccgccagaagaactgcctgatcgaccgcaccagccgcaaccgc
tgccagcactgccggctgcagaagtgcctggcggtggggatgtcacgagatgcggtgaag
ttcggccgcatgtcgaagaaacagcgagacagcctgtacgctgaggtccagaagcaccgg
ctgcagcagcagcagcgtgaccaccagcagcagcccggagaggcggagccgctcacgcct
acctacggcctctcagccaatggcctcaccgagctccacgacgacctcagcggctacatg
gatggtcacacccctgacggcagcaaaccggactcggcggtcagcagcttctacctggac
atccagccgtctcctgaccagtcaggcctggacatcaacggcatcaagccggagcccatc
tgcgactttgcccccggttctggcttcttcccgtactgctccttcaccaacggagaaacc
tcccccaccgtgtccatggctgaactagaacacctggcccagaacatctccaagtcacac
atggagacatgtcagtacctgagggaggagctgcagcagatgacctggcaggccttcctg
caggaggaggtggagagctaccagagcaagccccgggaagtcatgtggcagctgtgcgct
atcaaaataacagaggccattcagtacgtggtggagttcgccaagcgcatcgacggcttc
atggagctgtgtcagaacgatcagatagtgctgctgaaagcaggctctttggaagttgtg
ttcgtcagaatgtgccgtgccttcgactcgcaaaacaacacagtctattttgatggaaag
tatgccggacctgatgtgttcaaatcattaggctgtgacgacttgatcagctccgtcttc
gagtttgggaaaaacttgtgttctatgcacctgtctgaggatgagatcgccctgttctcc
gccttcgtgttgatgtctgctgaccggtcttggctccaggagaaggtgaaggtggaaaaa
ctccaacagaagattcagctggccctccagcacgtcctgcagaagaaccacagagaggat
ggcattcttacaaagttgatatgcaaagtgtcgacactgcgagcgctgtgcagtaggcat
acagagaagcttacggctttcaaagcaatatatccagacattgtgcgtgcccacttcccc
cccttatacaaggagctgtttggatcagactttgagcagtccatgcccgttgacgggtag
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