Pungitius pungitius (ninespine stickleback): 119196105
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Entry
119196105 CDS
T07626
Symbol
chd2
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 2 isoform X1
KO
K20091
chromodomain-helicase-DNA-binding protein 2 [EC:5.6.2.-]
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ppug03036
]
119196105 (chd2)
Chromosome and associated proteins [BR:
ppug03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
119196105 (chd2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_Hrp3
CDH1_2_SANT_HL1
Helicase_C
CHD1-like_C
Chromo
ResIII
HDA2-3
SLIDE
Motif
Other DBs
NCBI-GeneID:
119196105
NCBI-ProteinID:
XP_037307435
LinkDB
All DBs
Position
6:12493690..12515759
Genome browser
AA seq
1830 aa
AA seq
DB search
MLALNFLTVNTTTKDQPYKGFQDITMMKNKSKKQLDEGSTQSNASSNSASEESNRSASES
ASQSESEHGNERRRSHNSESNSSSDSECHSGSESESAARRATAEVKDKPVRKKERLADVK
KMWDEHPDVYGVRRSNRSRQEPARLNIGAGGSSDSEIESPKRKTSRAKKKENVWDSNDED
EEEEASDSADSEQEERKVRSRRLPARRPQAKSSTTKKQLSQKSRKSRKQDSSADEDDDED
DDEEDDDDEDTPKRLTRKRSATKVKSYKEDQHDFETDSDDLIEMTGDAGEEQQDDDSETI
EKVMDTRTGKKGATGASTTGYAMQENGDPNEGFDPEKDEGETQYLIKWKDWSYIHNTWES
MDSLLQQKVKGLKKMDNYKRKQEELNSWLNRVSPEDIEFHNCQQELISDLNKQFQNVERI
IATKTGKTPGSSDFPSHSHKIPPSNEPEYLCKWMGLPYSECSWEDGALVGRKFQHCIDSF
INRNSSKCVPSKDCKVLKQRPRFSPLKKQPSYIGDDNLQLRDYQLDGLNWLAHSWCRCNS
VILADEMGLGKTIQTISFLSYLFHQHQLYGPFLVVVPLSTLSSWQREFETWAPQMNVVVY
LGDVMSRKSIRDYEWINHQTKRIRFNALLTTYEILLKDKGVLGNINWAFLGVDEAHRLKN
DDSLLYKTLMEFRSNHRLLITGTPLQNSLKELWSLLHFLMPDKFDSWEDFDDVHGKGSDN
GYQSLHKVLEPFLLRRVKKDVEKSLPAKVEQILRVDMTAQQKQFYKWILTRNYRALFKGT
RGSSSGFLNIVMELKKCCNHSFLIKQPEDGDSETQQEHLKSVVRGSGKLVLLDKLLTRLR
ERGNRVLIFSQMVRMLDILAEYLAKNRYPFQRLDGSIKGEIRKQALDHFNAEGSEDFCFL
LSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEED
IIERAKKKMVLDHLVIQRMDTTGRTVLDSNSGNTNSNPFNKEELTAILKFGAEELFKEAE
GEESEPQEMDIEEILRLAETRESDQSSSATDELLSQFKVANFSSMEESAPEFVDKSIREW
DDIIPEEQRRKVEEEEKQREMDDIFMLPRSRSSNKRAQANDSDSDVGSKLKNRSSGSESE
TDDSDDDKKPKKRGRPRARKNNVEGFTDAEIRRFIKAYKKFGSPLERLEAIARDSELVDK
SIADLKRLGELIHTSCLTAVQEHEEHLKENPVEAKGPGKRRGINIKISGVQVNAKSIVQH
EEEFEPLHKVVPSNPSERYKFHLACRVKVAHFDVDWELQDDIQLLLGIYEHGFGNWDLIK
TDSDLKLADKILPDDPCKKPQAKQLQARAEYLLKMLKKEQDTTDLSKTGEEVKVRKRKPR
VKKENKILKDEQGNDISSPRLSDNLSEEGEVKDDGTEKSPTKKRQKKKDNKENKEKQGTP
KKEKDGDKDKKGPKPRKEKAKGAKGKKTQGPVHITAGSDPIPIEGKEDDGLDQDTFSVCK
ERMRPVKKALKQLDKPDEGLSDQEQLQHTRTCLLKIGDRITECLKAYSDPEHVKIWRRNL
WIFVSKFTEFGARKLHKLYKMAQKKRSHEEEKEQKKKEDSGGRGKNFRPEPCGSSRESTG
TQSSCKPGSHSSQTGPHGHHREPYNSANKRHFGNDDRGDWQRDRKYNYPSNSNQSWQGER
HHTYDRYKDHYGDRRPHGDSYRSSGSYRNNSSPRKRTYEQYSNDRDHRGHRPYYDRNSDP
KRRRPDEFRPNYHQGREGPLQDFRRMPEQRLTGPPGPEHYGRPFNADKPPPPLDPRSPQA
EKSPQDSRSPPERPADPNAAADPNWNNRKT
NT seq
5493 nt
NT seq
+upstream
nt +downstream
nt
atgcttgctctaaactttttgaccgtaaataccaccacaaaagaccaaccttacaaaggt
tttcaggatattaccatgatgaagaacaaaagtaaaaaacaactggatgaagggtcgact
caaagcaatgcatcaagcaattcggcctcggaggaatccaaccgctctgcgtcagagtcg
gccagtcagtccgagagtgagcatggcaacgagaggaggagatcgcacaactccgagtcg
aacagctcctccgactcagagtgtcactcggggtcagagagcgagtcggcagcccggcga
gccacagcagaagtgaaagacaagcccgttagaaagaaggagcgactggctgatgtaaag
aagatgtgggacgaacatccagatgtatatggagtcaggaggtcaaatcgcagtagacag
gagccggctcgtttgaacataggagctggggggagcagtgactcggagatcgaaagtccc
aagagaaaaacctcccgcgcaaagaaaaaagaaaatgtctgggactcaaatgatgaagac
gaggaggaggaggcttccgacagtgcagacagtgagcaggaagagagaaaagttagatcc
agacgacttcctgctagaagacctcaggccaagtcgtcaaccaccaaaaagcagctgtct
caaaaaagcaggaagtccaggaaacaggactcctctgcagacgaggacgatgacgaggac
gatgatgaagaggacgacgatgacgaagacactccaaagagactgactcggaaaaggagt
gcaacgaaagtcaaaagttataaagaggaccaacacgactttgaaaccgactctgatgac
ctgattgagatgacgggcgatgcaggcgaggagcagcaggatgatgacagtgagaccatt
gagaaggttatggacacaaggacagggaaaaaaggagcaactggggcttccaccaccggc
tacgccatgcaggaaaacggtgaccccaacgaaggcttcgaccccgagaaagatgaaggg
gagactcagtatctcatcaagtggaaggactggtcctacatccacaacacgtgggagagc
atggactctctgctgcagcaaaaagtcaagggactgaagaaaatggacaactacaaaagg
aaacaagaggagctgaattcctggttgaacagagtgtccccggaggacattgagtttcat
aactgccaacaagagctcatatctgacctgaacaagcagtttcagaacgtggagcgtatt
atcgcaacaaaaacaggaaagacaccaggatcctctgactttccttctcacagtcacaag
attccaccttccaatgagccagagtatctctgcaagtggatgggcttgccttattccgag
tgcagctgggaggatggagctttggttggaaggaagtttcagcactgcatcgacagcttc
atcaacagaaactccagtaaatgcgtcccctcgaaagactgcaaggtgttgaagcaaaga
ccgcggttctctcctctgaagaaacaaccatcgtatatcggagacgataaccttcaactg
agagattatcagctggatgggttgaactggttggcccactcctggtgcaggtgcaatagc
gtcatcctcgctgatgagatggggctaggaaagaccatccagaccatctccttcctgtcg
tacctttttcaccagcatcagctgtacgggcccttcttggtggtggtgcctctttccacg
ctcagctcttggcagagggagtttgagacctgggcgcctcaaatgaacgtggtggtctac
ctcggcgatgtcatgagcaggaaatcgatccgggactacgagtggatcaaccatcaaacc
aagagaatccgcttcaacgcgcttttaaccacctatgaaattctactcaaagacaagggg
gttctggggaacatcaactgggcgtttctgggcgtggatgaagctcacaggctgaagaat
gacgactccctgctgtacaaaacactaatggagttcaggtccaaccacaggctcctcatt
accggcaccccactgcagaactccctcaaagagctctggtcgttgttgcacttcctcatg
cccgacaagtttgattcctgggaggattttgacgacgtacacgggaaaggaagtgacaac
ggttatcagagtctccacaaggtccttgagcccttccttctgcggcgcgttaagaaagac
gtggaaaaatctctccctgccaaagtagagcagattctccgtgtggacatgactgcacag
caaaagcaattctacaagtggattttaacgaggaattacagagctcttttcaaaggcacc
cgaggcagctcttctggcttcctgaacatagttatggagcttaaaaagtgttgcaaccac
agtttcctcattaaacagcctgaggatggagacagtgaaacgcaacaggaacacctgaag
agtgtagtgcgaggcagtgggaagctggtgctgctggacaagctgctgaccagactgcga
gaaagaggcaacagagtcctgatcttctcccagatggtcaggatgttggacattctggct
gaatatctcgccaaaaatcgctacccattccagcggctggacggttccataaaaggagaa
atacgaaagcaagcacttgaccacttcaatgcggaaggatcagaagacttctgcttcctg
ttgtccaccagagctggaggcttagggataaacttggcctcagcagacaccgttgtcatc
tttgactctgactggaaccctcaaaatgacctgcaggcacaggccagggctcacaggatc
ggccagaagaaacaggtgaatatttatcggctggtaaccaaaggcacggtggaggaggac
atcattgagagggcaaaaaagaagatggttttggaccatctcgtcatccagagaatggac
actactggtcgaactgtacttgacagcaactcaggaaacacaaattcaaacccattcaat
aaggaggaactgactgccatcctcaagtttggtgcagaggagcttttcaaagaggcagaa
ggagaggagtctgaaccgcaggagatggacattgaagagatcctgaggttggctgaaaca
agagaaagtgaccaaagctcaagtgctacggatgaacttctctctcagtttaaggtagcc
aatttctcaagcatggaagagagcgcgccagagtttgtggacaagtccatacgggagtgg
gatgatatcatccccgaagagcagcggcgcaaagttgaggaggaggagaagcagcgcgag
atggacgacatcttcatgctgcccaggagcagaagctctaacaagagggcccaggcaaat
gatagtgacagtgacgtgggctccaagctgaagaaccgctcctcgggctccgaaagtgag
actgatgacagtgatgacgacaagaagccgaagaagagaggcagaccgagagcccgcaag
aacaacgtggagggtttcaccgatgcagagatccgcaggttcataaaggcatacaagaaa
tttggatctccgctcgaaaggttggaggccattgcccgagattctgagctggtggacaaa
tccatcgcggacctgaagagacttggtgaactgattcatactagttgtttgactgcagtg
caggagcacgaggagcacctcaaagagaacccagtcgaagctaaaggcccggggaagcgg
cgaggaattaacatcaagatctcgggagtgcaggtgaacgccaagtccatcgtccagcac
gaggaagagtttgagcccctgcacaaagtggtgccctccaatccgtctgagagatataag
ttccatctagcgtgcagggtgaaggtagcccactttgacgtagactgggagctgcaggat
gacatccagctcttgcttggtatctatgagcatggctttggcaactgggatctgatcaag
acggattctgaccttaaactcgctgacaagattctccctgacgatccgtgcaagaagcct
caggccaagcagttgcaggcgagagccgagtatcttctcaagatgttgaaaaaagaacaa
gacaccacggacctgtctaaaacaggggaggaggtcaaagtgaggaagaggaagcctcgg
gtgaaaaaggagaacaagatcctcaaggacgagcaaggcaatgacatctcctccccccgc
ctgtccgacaacctgtcagaagagggcgaggtcaaggatgatggaacagagaaatccccc
accaagaaacgacaaaagaaaaaggacaacaaagagaacaaagaaaaacagggaactcct
aaaaaggaaaaagacggggacaaagacaaaaagggaccaaagcccaggaaagaaaaggct
aaaggagctaaagggaagaagactcaaggtccagtccacataacggctgggtccgacccc
attcccattgaaggaaaggaggatgatggacttgaccaggacactttcagtgtttgtaag
gagcgcatgagaccggtcaaaaaggccctgaagcagctggataaacccgacgagggtctg
tctgatcaggagcagctccagcacacccgcacatgcctgctgaagattggagaccgaatc
acagagtgccttaaagcctacagtgacccggaacatgttaagatatggcgcagaaacctt
tggatatttgtatccaagttcacagagtttggtgccaggaagcttcacaagctttacaaa
atggcgcagaagaagcgatcacacgaggaagagaaagagcagaagaagaaggaggattct
ggagggaggggcaaaaacttccgccccgagccctgcggctccagtagagaatccacgggt
acccagtcgtcctgcaaacccggatcgcactcctctcagacgggcccccacggacaccac
agagagccgtacaactcggctaacaaacggcactttggcaatgacgatagaggagactgg
cagagggaccgtaaatacaattacccgagcaacagcaaccagtcgtggcagggcgagcgg
catcacacgtacgatcgctacaaggatcactatggcgaccggcgaccacatggagattcg
taccgcagctcgggcagttaccgcaacaacagctcccctcgaaaaaggacctacgagcag
tacagcaacgaccgggaccacaggggccacaggccctattacgacaggaactcggatccc
aaaagaaggcgtcccgatgagttccgtcccaactaccaccagggaagagagggccccctg
caggacttcaggaggatgccagagcagaggctgactggtccgcccgggccggagcactac
ggccggcccttcaacgccgacaaaccccccccgccactggacccccgctcgccgcaggca
gagaagtctccgcaggactcgcgctctccaccggagcggcccgccgaccccaacgccgca
gccgaccccaactggaacaacaggaaaacatga
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integrated database retrieval system
