Pungitius pungitius (ninespine stickleback): 119196120
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Entry
119196120 CDS
T07626
Symbol
deaf1
Name
(RefSeq) deformed epidermal autoregulatory factor 1 homolog isoform X1
KO
K23041
deformed epidermal autoregulatory factor 1
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ppug03000
]
119196120 (deaf1)
03019 Messenger RNA biogenesis [BR:
ppug03019
]
119196120 (deaf1)
Transcription factors [BR:
ppug03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
SAND domain-containing proteins
119196120 (deaf1)
Messenger RNA biogenesis [BR:
ppug03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
119196120 (deaf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SAND
zf-MYND
DUF4402
Auxin_repressed
Motif
Other DBs
NCBI-GeneID:
119196120
NCBI-ProteinID:
XP_037307463
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All DBs
Position
6:21378090..21384096
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AA seq
694 aa
AA seq
DB search
MHSCENNSEEMSLWGIKYSSSGYIRVCVCVCVLAAVCRFGSTRVLPVVSGSSFSRDFMKK
DKWPSGRSLFSPDSFSRFLGRSRCVSPLRGPGITVRAARPQARTGLGCARTAAARWRSAL
VVSAGGGMDEADSATKALGLDEPPIDTPPVQEVGSDTESEAEVTTMAVMADPENLDMGAE
SLPNSDEAEAAYAEVTAVTVADVQAGEDNVFTTTVATSGSLPEHVLSGRTTLQLGDGLGT
QKATLIVVHTDGSIVEATGLKSAASMASGPQTPPTPLTPPQDKDSCSKYNWDPSVYNSEL
PVRCRNTSGVLYKSRLGSGGKGRCIRHNQQWFSPTEFEGLAGRASSKDWKRSIRYAGRPL
LCLIQERILNPHAASCTCAACCDDLTGCPKDGEAVEAENISMTGPVRLFVPYKRRKKDNE
PLVASPKKEPPAAKNITLTPGTTCTSGDLGPTSDWWREKIVCGSGAAGLVTVSPSGQFTT
SGTLTFERTPPGDAAIISEGSPQSEVFASTAVLTALPALAVTPQPLQAKMAVTVAASPSA
ALVSSLEAEPLGGAGPVLIEGQRNAWLHLEEMANTLMSNVQQLKVLIEQAKNSAGVKGQG
GRKELFQNQITFQQPDESEVKRSSDITEIIINMCVNCGRVAMSECTGCHKVNYCSPFCQR
KDWKEHQHTCCQSAGGVSVQEEEPITAMDMDKVK
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atgcattcatgtgaaaataatagtgaagaaatgagtttatggggaataaaatattctagt
tcgggctatatccgcgtgtgtgtgtgtgtgtgtgtgttggccgctgtgtgtcgcttcgga
tccactcgtgttcttccggtagtctccggttcatccttttcgagagacttcatgaaaaaa
gacaaatggccgagcggccgtagtctcttttctcccgactcgttctctcggttcttggga
cgcagccgctgcgtttcgccgcttcggggccccggaataaccgtgcgcgcggctcgtccc
caggctcgtaccgggctcggctgcgctcggaccgcggctgctcggtggcgttcggctctt
gtcgtttcggcgggcggtggaatggacgaggcggactcggccacgaaggcgctcgggctg
gatgaaccgcccatcgacacgccgcccgttcaggaagtgggctcggataccgaatcggag
gccgaagtcaccacgatggccgtgatggcggatccggaaaacctcgacatgggagccgag
tccctgccgaactcagacgaggccgaggcggcgtacgcagaggtgaccgctgtgacggtg
gcggacgttcaagctggagaggacaacgtgtttaccacgacggtcgcaacctcaggaagc
ctccctgaacacgtgctgagtggcagaacaaccctccagctgggggatggtctcggcacc
cagaaggccaccttgatcgtggttcacaccgacggcagcatcgtggaggccaccggcctc
aagtccgctgcatcgatggcatcagggccgcagaccccgcccaccccgctgactccgccc
caggacaaggactcgtgctccaagtacaactgggacccgtcggtctacaacagcgagctg
ccggtccgctgcaggaacaccagcggagtcctctacaagtcccggctgggatcagggggc
aaaggtcgctgcatcagacacaaccagcagtggtttagtcccaccgagttcgagggtctg
gcaggaagagcgagcagcaaagactggaagaggagcatcagatacgctgggaggcctctg
ctctgcctcatccaggagcggatcctgaacccgcatgctgcttcctgcacctgtgcagcc
tgctgtgacgacctgaccgggtgtccaaaggacggagaggctgtggaagcagaaaacatc
agcatgacgggtccggtccgtctcttcgtcccctacaagagacggaagaaggacaacgag
ccgctggtcgcctccccgaagaaggagccccccgccgctaaaaacatcacgctgacgccg
gggaccacgtgtacgtcaggtgacctcggcccgacctctgattggtggagggaaaagata
gtttgtggttcaggagcagcaggtttagtcacggtgtccccgtcgggacagttcaccacc
tcgggcaccttgaccttcgagcgtacgccgccgggggacgccgccatcatctcggagggg
tcgccacagagcgaggtgttcgccagcacagcagtgctgacggcgctgccggcgctggcc
gtgacccctcagccgcttcaggccaagatggcggtgacggtggcggcgtctccgtcggcc
gcgctggtgagcagtctggaggcggagcctctggggggggcggggccggtgctcatcgag
ggccagaggaacgcctggctgcacctggaggagatggccaacacgctgatgagcaacgtc
cagcagctgaaggttctaatcgaacaggccaaaaactctgccggggtcaaaggtcaggga
ggcagaaaggagttgtttcagaaccagatcacgttccagcagccggacgaatcggaggtc
aagaggagctctgacatcacagagatcatcatcaacatgtgcgtgaactgcggccgcgtg
gcgatgagcgagtgcacggggtgtcacaaggtcaactactgctcccccttctgccagagg
aaggactggaaggagcatcagcacacctgctgtcaatcagccgggggcgtgtccgtccag
gaggaggagccaatcacagccatggacatggacaaagtgaaatga
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