Pungitius pungitius (ninespine stickleback): 119196176
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Entry
119196176 CDS
T07626
Symbol
edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119196176 (edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppug03019
]
119196176 (edc4)
Messenger RNA biogenesis [BR:
ppug03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119196176 (edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
119196176 (edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_Prp19
Beta-prop_TEP1_2nd
WDR55
Motif
Other DBs
NCBI-GeneID:
119196176
NCBI-ProteinID:
XP_037307571
LinkDB
All DBs
Position
6:complement(6134499..6157232)
Genome browser
AA seq
1386 aa
AA seq
DB search
MASNSNIDIEGATQHLRDILKLDRPGNTTDASSDILRMPTLNGELNGLLGAAGLLGGTDR
SSMSDSTRPISTDLCSTQECQIICLSGDDGSTCTPITSNNVEIVASQDTSINSKARGSNK
VKIQPVAKYDWEHKYYYGRLIAVSNSFLAYAIRGANNHAMIRVLSVTFAERSLLKGFTGA
VTDLAFAHLDSSLLGCVDEAGNLMVWQLTCTGSKIFDQIVVHIRRPEDSPLNSHRRLIWC
PFIQDDNDDNQEDISQTLALLHEDLAEVWDLEVLRANHSSWPVDDTDVKEGLIIVKGHTQ
RVSEGALSPDGTVLATASHDGYIKFWQIYIEGVQDKPRCLHELRPHGGRPLSCLLFCDNH
KRQDPDVPFWRFLITGADQNQELKLWCTVSWTCLQTIRFSPDLFNSSVLPSLKASLDLAS
EYLILTDVQRKVLYVMELRQDLEKGKASFTAVSEFLLTHPVLSFGVQDVSHCRLRHTEVL
PAEEESESMTTEGTQGLTESKSGIQIKLYCVHTKSLQDVQIWFQPSSPVFLPNSDTQDGF
AGFSDNLTDHSSDKESGNGSQTDLRKIPSLPAPTDFLSTSGASSGTKLMTPDAFMTPSTS
VPASPGSSASSLTVVTAINSNSDLTNRAMDEVSQSPNRAENSSSSSSSLTLSSSSPRAVS
AVLLPGLENLQALASPSGPLALDSPQVVDSPLLPPLASPTRARSPDVISSASTAMSQDMP
EIASQTLQLQRGHLSGLEPVPLSSLQADSMASAASALHLLTSPRSANNGLLPPELGGADG
PVGGAGGDSEARLSHTPSLLENALLQENPGVGGGSSEGNVSHTSWPAAPDITRETRNSLR
DNGLGEYSREESKDRRLSSPYHRRSYHLTQNDSQDACGEQSDPNDEGSGLVSSGNCGSRS
SHRLPVKDWKTSPRASPKGKRKTKKDDGELSQSRQMDSGQMNAEVQDELLMLLRSQQREL
TDLRGQIEAMQSTIMAQVEHVLTNHQEQEQRRLERVLAERQNDQQQLQEQLSQQLSSTLS
SVLTNRMDKVLREEMKKTVPQSISKSLEPVTGQLSNTIAAKLTAVEITLKDNVSKVVKSK
NTTDAIGRAAAEAMQGPIQAAYKDAFQSIVLPVFERGCQSMFQQINDSFKQGTQEYIQQL
ESHMKNKKQREQETRDPVISQLQQTIETFQSSTDQLANNITANVRAEVQHQIQMMVGNLQ
ESILSHVQRIVKGEVSMAMKEQQAVVTSSIMQAMRSAAGTPVPTAHLDYQTQQANILQLL
QQGQLNQAFQQALSATDLNLVLYVCETIDSQQVFGQHPCPLSQPVLLSLIQQLSSNLTTR
SELKISYLEDAVMNLDHGDPLTRDHMSSVLAQVRPKLFTFLQQDPHSPLSKRARRLMMML
QGLVSH
NT seq
4161 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccaattctaacatagatattgagggtgcgacccagcatcttcgcgacatccta
aagctcgaccgtcccgggaacaccaccgatgcatcaagtgatattctgagaatgccaact
ttaaatggagagctgaatgggttattgggagcagcaggccttctgggaggaactgatcgg
tcatccatgtcggactctaccagacccatctccacagacctgtgcagcactcaggagtgt
cagataatctgcctttctggtgatgatggctccacctgtacccctatcacctccaacaat
gtggagatagtggcgagtcaggataccagcatcaatagcaaggctcgtggcagcaacaag
gtgaagatccaacctgttgctaagtatgactgggaacacaagtattattatggcagactg
atagccgtctccaactctttcctggcctatgccatccgaggagccaacaaccacgcgatg
attcgagtcctgagtgtgacttttgcagagcgctctttgctgaagggcttcactggagct
gttacagatttggcctttgcccaccttgactcctcgctgttgggctgcgtagatgaggca
ggcaacctcatggtctggcagctcacctgcactggaagcaagatatttgatcagattgtg
gttcatatccgacgaccggaggactctccgctgaactcccaccgtcgcctcatctggtgc
ccgttcatccaggatgacaacgatgacaaccaggaggacatcagccagaccctagccctt
ctccacgaagacttggctgaggtgtgggacctggaggtgttgagagccaaccacagtagt
tggcccgtggatgacacagacgtgaaagaaggtctcatcatagtcaagggacatacccag
agagtcagtgagggggctctgtctccggatggaacggtgttggccacagccagccacgat
gggtacatcaagttctggcagatatacatcgaaggggtacaggacaagccaaggtgtctt
catgaattgcggccccatggaggacgtcccctttcctgccttctgttctgcgacaaccac
aaaagacaggatcctgacgttcctttctggcggttccttataactggagcggatcagaac
caggagttgaaattgtggtgtactgtttcctggacctgcttacagaccatcaggttttca
ccagatttgttcaactcctcagttctaccgagtctgaaggccagtctggacctcgcttct
gagtacctcatccttactgacgtacagaggaaggttctgtatgtgatggagctccggcag
gacctggagaaaggaaaggccagttttacagcagtgtcggagttcctgctgacccaccct
gtgctcagctttggggtccaggacgtctcacactgccgactgcgacacaccgaggttctc
cccgcggaagaggagagcgagagtatgacaacagagggcacgcaaggactaacagagtct
aagtctgggatccagattaaactctactgtgtccacaccaagagtctgcaggatgtccag
atctggtttcagcccagctctccagttttcctgcccaattctgatactcaggatggtttt
gcaggcttttcagacaatctcactgaccacagctcggacaaggaatcgggcaacggctcc
cagactgacctaagaaagatcccgtcacttcctgctccaactgacttcctgtcaacctcg
ggggccagcagtggcaccaagctgatgactccggatgccttcatgacaccaagcacttcg
gtaccagcatcccctggcagcagcgccagcagtttgaccgttgtgacagcgatcaacagc
aactctgacttaactaacagagctatggatgaagtcagtcagagtccaaacagagcagag
aacagcagcagcagcagcagcagcctgaccctctccagcagcagcccaagagctgtttct
gcagtgcttttgcctggacttgagaacctacaggcattagcatcccccagcggtcctctg
gcactggatagccctcaggttgtggactcccccctcctaccccctctggcttctccgacc
agagcccgctcccccgacgtcatctcctcggcctccaccgccatgtcccaggacatgccg
gagatcgcatcgcagacccttcagcttcagcgcggccatttgtccggtttggagccggta
ccactctcctctctccaggcggacagcatggcttccgctgcatcggccctgcaccttctc
acttccccgcgctcagctaacaacggcctgttgccccccgaactcgggggtgcagatggt
ccggtgggcggcgcaggaggagattctgaggccagactcagccacaccccatccctgctg
gagaatgccttattgcaggaaaaccccggtgtcggtggaggctcttcagagggcaatgtc
agccacacatcgtggccggctgcgcccgacatcaccagggaaaccaggaacagtctccgg
gacaacggcctcggagaatactcgagagaggagtcgaaggacagacggctgagctcacct
taccatcggcgctcctatcacctcacacagaatgacagtcaggacgcctgcggggagcag
agtgacccgaacgacgaggggtccggcctcgtgtcctcaggaaattgtggctctcgttcc
tctcaccgactaccggttaaggactggaagacctcaccacgcgcctcgcccaaagggaag
aggaagaccaagaaagatgatggggaattgtctcagtccaggcaaatggactctggtcag
atgaatgccgaagtgcaggacgagctgctgatgctcttgcgtagccagcagagggagctg
actgacctgcgtgggcagattgaagccatgcagagcaccatcatggcccaagtagagcac
gtcctcaccaaccaccaggagcaggagcagcggagactagagcgggttctggcagagaga
cagaatgaccagcagcagcttcaggagcagctcagccagcagctcagcagcaccctcagc
tcggtgctaaccaaccggatggacaaagtgctccgggaggaaatgaagaagacggtccca
caaagcatctctaagagtctggagcctgtgacagggcagctgagcaacaccatcgctgcc
aagctgaccgctgtggagatcacactgaaggacaatgtcagcaaggtggtcaagtccaag
aacacaacagatgcgattggtcgagcagcggccgaagcgatgcagggtcccatccaggcg
gcctacaaagacgccttccagagcatcgtgctgccagtatttgagagaggctgccagtcc
atgttccagcaaatcaatgacagctttaaacaaggcacacaagaatacatccagcagctc
gagagccacatgaagaacaaaaagcagagagagcaggagacacgagaccccgttatcagc
cagctccagcagaccatcgagactttccagagctccaccgatcagctggccaataacatc
acggctaatgtgcgggccgaggtccagcaccagatccagatgatggtgggaaatttgcag
gagtctattctgagccatgtgcagcgaatcgtcaaaggcgaggtgagcatggcgatgaag
gagcagcaggcggtggtcacctccagcattatgcaggcgatgaggtcagcggccggcact
cccgtccccacagcgcacctcgactaccagacacagcaggccaacattctgcagctcctc
cagcagggccagctgaaccaggctttccagcaggctctgtcggccacagatctcaacctg
gtcctgtacgtgtgcgagaccattgactcccagcaggtgtttgggcagcacccgtgtcct
ctcagccagcccgtgctgctgtcgctcatccagcagctctcctccaacctcaccacccgc
tctgagctcaaaatcagctacctggaggacgccgtgatgaatctggaccacggcgacccg
ctgacccgggaccacatgtcctctgtgctggcccaggtcaggccgaagctatttaccttc
ctgcagcaggacccccacagcccgctcagcaagagggcgcgccgcctgatgatgatgctg
cagggcctcgtcagccactag
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integrated database retrieval system
