Pungitius pungitius (ninespine stickleback): 119196266
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Entry
119196266 CDS
T07626
Name
(RefSeq) transcription initiation factor TFIID subunit 4 isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
119196266
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppug03021
]
119196266
03036 Chromosome and associated proteins [BR:
ppug03036
]
119196266
Transcription machinery [BR:
ppug03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
119196266
Coactivators
SAGA/TFTC/STAGA complex
119196266
Chromosome and associated proteins [BR:
ppug03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
119196266
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TAF4
TAFH
Motif
Other DBs
NCBI-GeneID:
119196266
NCBI-ProteinID:
XP_037307712
LinkDB
All DBs
Position
4:complement(1351373..1414573)
Genome browser
AA seq
1070 aa
AA seq
DB search
MAGASDPLEDMLFSEVDEKAVSDLVGSLESQLAGQSNLTGKADENGGAGSVAPANHHLGK
TLPAPVGTTTLAQQQQGRRNKPEMPPEINSKDASPDTAAKSPSPDSTRYSGEPPAAPAAC
AGATSASGSRSHGASITTLAASGASTLASAADSISTASVLGSKVSPGSCGSSSEESNPPR
KRIGAPRRSASTRVKSLNGAAVTTRRNSGTAAVSQDPSAAETADPTTPNSTRPAASSINT
STFTVSNADLPAGQSAIALDRGTPTIALRRLPSHIVASIAQTGSGTSVSALAQQGARVGP
AAPPSTSRGDHSPDDRQSKTVPPSQPASSVNSVISTVSAVVTTTTTTTTAAAAAATPSAM
VTRPASSAAAAAGVAGPAASSACVTGQVTSVATAVSMVRPSLPSPTPAAQVQPRPGLAAP
QRIAAPQVIIRPPQQPTTIQLPPGFTIPPGMVLVRTELGQLVMVPQQALAQAQAQAQAQA
LNNISPRPATPTAGASFRVTTPQSPATSLTARQCPLTPAKMAPSPSPNPSSPALQTSSSS
FSSSSSSSCPALRPKAPVAPAAPAAPAPATQQTPAVAVAPQAPAPAASQPTQLPQTSIAA
NPASQEMQENVKKCKNFLATLIKLASHNSPSPETSKNVKSLVQDLLDAKIEPEEFTSRLQ
TELKSSPQPYLVPFLKKSLPALRLSLMNSQQSPTPSQQQGVKPPPCGAPPTLASGPAVRA
RHPNSVSITPGAGAPPAGAPGHAAAVGIKAASTAGGPVRMPMVISQSVRTQGTMGKGGFI
QAGRSPVGPAAAQICGNQRNKLNDPGGGSFRDDDDINDVASMAGVNLNEESARILATNSE
LVGTHIRSCKDEAFLHPGLLHRRILETARKFGVTEVPMEAVTFISHAAQARLRTVVEKVS
TIAQHRLDSCKDDECYEQSADARSQLRFFEQLERMEKQRKDEQEREILLKAAKSRSRQED
PEQARLKQKAKEMQQQELAQMRQRDANLTALAAIGPRKKRKVDSPGTTPPGAEVSGSAAG
SPAASSSPSTSSRQYARQRITRVNLRDLIFYMEQERETAHSLLLYRALLK
NT seq
3213 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcgcctccgaccccctggaagatatgctgttttcagaggtggacgaaaaagct
gtgagcgacttagtgggctcactggagtcacagctcgccggacaaagcaaccttacaggc
aaagcagacgaaaacggaggcgcaggctcggtggcccctgctaaccatcacttgggaaaa
acgctaccagctccagtgggcacaacaacactagcacaacaacaacaaggacggcgaaat
aaacccgagatgcccccggagatcaactcaaaggacgctagcccggataccgctgccaag
tccccttctccggactctacccgttattccggcgagccgcccgccgctcctgctgcctgc
gcgggagccactagcgccagcggctcgcgatcacatggagcatccatcacaacactggcg
gcgtccggcgcgtcaactttggcgtccgcggcggacagcatcagcaccgcatccgtgctg
gggtctaaggtcagtccggggtcgtgcgggtcctcgtcggaggaatccaacccgccgcgg
aaacgcataggcgcgccgcggaggagcgcctcaactcgggtaaagagtttgaacggcgcg
gctgtgacgaccaggaggaacagcggcaccgcggcggtgtcccaggacccgagcgccgcg
gagacggcagacccaacgacgccgaactccactcggccggcggcgtcctccatcaacact
tcgactttcacagtctcgaatgctgacctgcccgcgggccagtcggctatcgctctggac
cgggggactcccaccatcgcgttgcgcagactccccagtcacatcgtggcgagcattgcc
cagaccggcagcggaaccagcgtgtcggccttggcccagcagggcgctcgcgtaggaccg
gccgcccccccctcgacttcgcggggggaccacagccccgacgaccgtcagtccaaaact
gtaccgccaagccagccagccagtagcgtcaactccgtaataagcacggtctccgctgtt
gtcacgacaaccacaaccacaaccacagcagcagcagcagcagccacaccgtccgcgatg
gtgacccggcccgcgagctccgcagcggccgctgctggcgtcgcggggcccgcagcgagt
tccgcgtgcgtaacgggtcaggtcacgtcggtggccaccgctgtgagcatggtcaggccc
agtcttccctcaccgacccccgccgcgcaggttcaacctcgcccgggactggcggcgcct
cagaggatcgcagccccgcaggtgatcatcagaccgcctcagcagccgacgaccattcag
ctgccccccgggttcaccatcccaccggggatggtgctggtgcgcacggagctgggccag
ctggtgatggttcctcagcaggctttggctcaggctcaggctcaagctcaggctcaagct
ctgaacaacatctccccacgacctgccacccccacagcaggagcgtccttcagagtaacg
actcctcagtctcccgcgacctctctgaccgccaggcagtgccctttgaccccggccaag
atggcaccgtctccctctcccaacccgtccagccctgccctccagacctcctcttcttcc
ttctcctcctcctcctcctcctcctgtcctgcactccgcccaaaggcccccgtggcgccg
gccgcgccggccgcgccagcgccggctacgcagcagacccccgcggtggcggtggccccc
caagccccggccccggcggcctcccagccgacgcagcttcctcagaccagcatcgccgcg
aaccccgcgtcccaggaaatgcaggagaatgtcaagaagtgcaagaatttcctggccacg
ctcatcaagctggcgtcccacaactctccgtcccccgagacctccaaaaacgtcaagtct
ctggttcaggacctgctggatgccaagattgagccggaggagttcaccagccggctgcag
actgagctcaagtcgtcgccacagccgtacctggtgccctttctcaagaagagcctgccg
gccctgaggctgtccctgatgaacagtcagcagtccccgaccccgtcccagcagcagggg
gtcaaaccgccgccctgcggggcccctcccaccctcgcgtccgggccagctgtccgcgcg
cgccaccccaacagcgtcagcatcacgccgggtgccggcgcgccgcctgccggggcgccg
gggcatgcagccgccgtgggtatcaaggcagcaagcaccgccgggggccccgtccggatg
ccgatggtgatctcgcagtccgtcagaacccaaggcacaatggggaagggaggcttcatc
caagcgggcagaagtcccgtgggccccgctgccgctcagatctgtgggaatcagagaaac
aagctcaacgaccctggaggaggttctttcagggacgatgacgacatcaacgacgtggcc
tccatggccggcgtgaacctgaatgaggagagcgcgagaatcctcgccaccaactccgag
ctggtggggacgcacatccgctcgtgcaaagacgaggccttcctccacccgggcctgctc
catcggcgcatcctggaaacggccaggaagtttggagtcactgaggtgccaatggaggcg
gtgacgttcatctctcacgccgcacaggctcgtctccggaccgtagtagaaaaggtttca
accatcgcacagcaccgactggactcctgtaaggacgacgagtgctacgagcagtcggcg
gacgcccgctcgcagctgcgcttcttcgagcagctggagaggatggagaagcagaggaag
gacgagcaggagagggagatcctgttgaaagcggcgaagagtcgctccaggcaagaggac
ccagagcaagcgcgactgaaacagaaagccaaggagatgcagcaacaggaactggcgcag
atgaggcagcgagacgccaacctcacagcactggctgccattggcccccgcaagaagcgc
aaagtggattcgccggggacgaccccgccgggggccgaggtttcaggcagcgcggcgggc
tccccggcggcctcctccagcccgtccacctcatcgcggcagtacgcgcgccagcgcatc
acccgcgtcaacctcagggacttaattttctacatggagcaagagagagagaccgcccac
tccctcctcctctaccgcgccctgctcaagtag
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integrated database retrieval system
