Pungitius pungitius (ninespine stickleback): 119196275
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Entry
119196275 CDS
T07626
Symbol
gtf2h1
Name
(RefSeq) general transcription factor IIH subunit 1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03022
Basal transcription factors
ppug03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
119196275 (gtf2h1)
09124 Replication and repair
03420 Nucleotide excision repair
119196275 (gtf2h1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppug03021
]
119196275 (gtf2h1)
03400 DNA repair and recombination proteins [BR:
ppug03400
]
119196275 (gtf2h1)
Transcription machinery [BR:
ppug03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
119196275 (gtf2h1)
DNA repair and recombination proteins [BR:
ppug03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
119196275 (gtf2h1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
GeBP-like_C
Motif
Other DBs
NCBI-GeneID:
119196275
NCBI-ProteinID:
XP_037307727
LinkDB
All DBs
Position
6:15324833..15329862
Genome browser
AA seq
547 aa
AA seq
DB search
MASLSEEVLLVVKKVRQRKQDGTLYLMAERIAWGPEGKDRFSVSHLYADIRCQKISPDGK
AKIQLQLVLHTGDSTTFHFSNDSSALKDREAAKELLQQLLPKFKKKANKELEEKNRMLQE
DPVLFQLYKDLVVSQVISADEFWANRLGDTNHADPSLPNNKQEVGISGAFLADIRPQTDG
CNGLRYNLTADIIESIFRTYPTVKQKYCENVPHNLTEKEFWTRFFQSHYFHRDRINTGTQ
DIFSECAKQDEKGLKSMVVQGVKNPLVDLLSLEDKTLDEGYGVCTTMASTSNSNRTVKDS
SNSAIIKRFNHHSAMVLAAGSQKGEMPASETSSADGNSRDSDFFQPLVKKVRLQETMEYE
DLQGENRPKTVALNLKKSDRYAHGPVPLQSQHYTTSQEIINSVNNIRDEMINYKPNLSQV
LSNTTASSAIAALSSGGVLMKAATQQAINQMIPSEVQGELKHLYAAAGELLRHFWSCFPA
NTPFLEEKVLKMKSNLERFQMTKLCPFKEKIQRQYLSTNLTGHLEEMLQAAYSKFHVWQT
RRMLRKT
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctctgtccgaggaggtgctgctggtggtgaagaaggttcgccagaggaagcag
gatgggaccctttatctgatggctgaacggatagcctggggtccagagggtaaagaccgc
ttctccgtcagccacttgtacgctgatattcgctgtcagaaaatcagcccagacggtaaa
gccaaaattcagctgcagctggtgcttcatacgggcgacagtaccacattccacttttcc
aatgacagcagcgctctcaaagaccgagaagccgccaaggagctgctgcagcagctgctg
cccaagttcaagaagaaagccaacaaggaactggaggagaaaaacaggatgcttcaagaa
gatccagttcttttccagttgtataaagatctggttgtgagtcaggtgattagtgcagat
gaattctgggccaaccggttaggagacacaaaccacgcagacccctccttacccaacaac
aaacaggaagtcggtatatctggagcctttttggcagatattagacctcagacagatggc
tgtaatggcttgagatataatctgactgctgacattattgaatccatctttagaacatac
cctacagtgaaacaaaagtattgtgaaaatgtgccacataacctgacggagaaggagttc
tggacccgctttttccagtcccattactttcacagagaccgcatcaacacagggacacag
gacatcttctcagagtgtgccaagcaggatgaaaagggcttaaagtctatggtggttcaa
ggagtgaaaaatcctttggtggacctcctgtcgttagaagataaaacattagacgagggt
tatggagtttgtacaacaatggcctcaacttccaactctaaccggacggtgaaggacagc
agtaattctgccatcataaagcgcttcaaccatcacagtgccatggtgctggcagcgggc
tcacagaagggggaaatgccagctagcgagacgagcagtgcggatggaaactcgagggac
tctgacttcttccagcctcttgtgaagaaggttagattacaagagaccatggaatatgaa
gatctgcagggagaaaacagaccaaaaaccgttgcattaaacctgaagaagtctgacagg
tatgctcatggtccagtgccacttcagtcccaacattatacgacaagccaggaaatcatc
aactctgtcaacaacatccgggacgagatgatcaattacaaacccaacctcagtcaggtg
ttgtcaaacacaaccgctagttctgccattgcagcactttcttcaggtggcgtcctcatg
aaggcagcaacacagcaagccattaatcagatgataccctctgaggttcaaggagagttg
aagcatctttatgcagctgctggagagttgttgagacacttttggtcgtgttttcctgca
aacacgccatttttggaggagaaggtgctgaaaatgaagtcaaatcttgagagattccag
atgaccaagctttgtcccttcaaggagaagattcagcgccagtacttaagtacaaatctc
acggggcatttggaggagatgctgcaggccgcctacagcaagttccacgtctggcaaacc
cggcgcatgttgaggaaaacctga
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