Pungitius pungitius (ninespine stickleback): 119196449
Help
Entry
119196449 CDS
T07626
Symbol
lamb1a
Name
(RefSeq) laminin subunit beta-1a
KO
K05636
laminin, beta 1
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug04510
Focal adhesion
ppug04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119196449 (lamb1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
119196449 (lamb1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
LAMININ_IV_B
Laminin_N
EGF_LMN_ATRN
LAMB1
F5_F8_type_C
Motif
Other DBs
NCBI-GeneID:
119196449
NCBI-ProteinID:
XP_037308047
LinkDB
All DBs
Position
6:complement(22529412..22553754)
Genome browser
AA seq
1799 aa
AA seq
DB search
MLELQLSVLLVLQVFIYAQDEGGMVGGAQDDVSLPEFTDVCTEGSCYPATGDLLIGRAHQ
LSSTSTCGLTHPEPFCIVSHLQEEKKCFLCDSSTPYDEFSSPTRGHRIENVVTTFAPNRL
KTWWQSENGLENVTLQLDLEAEFHFTHLIMTFKTFRPAAMLIERSADFGKNWQLYRYFAY
DCESSFPSVSQGPMQKVDDVICDSRYSDIEPSTEGEVIFRVLDPVFRIEDPYSPRIQNML
KITNLRVKFTRLHTLGDNLLDSRMEIKEKYYYAIFDMVVRGNCFCYGHAAECAPVQGAGQ
TSEGMVHGHCMCNHNTEGLNCEKCLDFYHDLPWRPAEGRNTNACKKCNCNHHTSSCHFDM
AVFVASGNMSGGVCDDCQHNTAGHNCERCEPFYFQHPERDARDPNICQPCNCDSVGSLNG
GLCDGTTDVRAGLIAGQCRCKVNVEGERCERCKQAHYGMGHEPEGCKACTCSPLGTLAGG
NPCDSETGSCFCKRLVMGRDCDQCVAEHWGLSNDMDGCRPCDCDLGGAINNQCDQVTGQC
VCRDHMFGRRCDQVESGFYFIALDHYTYEAEDAKFGPGVTVVPRHHPLDRNPTWTGIGLV
NVPEGAFLEFSVDNIPHSMEYNILIRYEPQLPDQWEEVLMTVIRPGPIRADSRCVNTVPD
DDHQMISLHPGSRYASLARPVCFESGQNYTIRLSLPLYSALSDVQSPYTLIDSIVLMPHC
KNLEIFSTSEGGDSSGNSGWETFQRYRCLENSQSVTRSPMTDICRNFIFSISAMLHQGAR
ECHCDPQGSLSTVCDPSGGQCECRSNVVGRNCDRCAPGTFEFGPNGCRACSCHPQGSQSL
FCSELTGKCACVFGAYGRQCDRCLPGHWGFPACRPCTCNGHTDDCEPNTGRCIDCRDHST
GHACDRCLDGYYGDPLLGSGDHCRPCMCPDGPGSLRQFAGSCYLGDDTQQAVCVCDNGYR
GSRCDECSPGYYGNPGDVGGQCQPCQCNNNIDMLDPESCDSRTGECLRCLYHSEGYACQS
CKHGYYGNALLQDCQKCVCNQLGSDSSTCPSSGDCHCDRSNGQCHCLPNVVGQHCDRCAP
DTWNVASGSGCEACACDPRHSHGTSCNEISGQCSCQPGFGGRTCSECRELFWGEPEVKCH
ACDCDPRGISQPQCNKDSGHCVCVEGVSGPRCDVCSRGFSGTFPNCQRCHQCFTEWDDVI
GQLTNQTHRLVNKVNAMKASGVSGPYKKSIDGLERSVADIWVVLNQNPASQPLSETQELL
QQASDLMGTLSQMLNQTEQTLIQVEDQDSAVETKLDSVMSDAHKLEQTVQELMDQVEFIK
NSDIRGATDSITRYFRQSLAAEVGANASTINPGSPVETSIALRQLTEAKLNQSREEFLRK
HTEHARRLDDLAGELQTLDLSEISHKTCGSPSSGQDSCLSSPCGGLGCVDSEGQTRCGGE
GCDGVITVASNIWKKTQDSEQEIISAMQEVEKLSQMVSEAKFKADEAKLSAQEVLMKSNR
TKQKVLQSNEELRVLIRQIRDFLTQDAADLESIELVANEVLAMQMPTTPAQLQNLTEDIR
QKVGELGHVEDILQQSAADIQRAENLLDQARLASEEAADVKDSAEKVKRALEEAQKAQTS
ASSAIQQAAADIQNTNQLLSSVELETSHAELKLNNSTQRLQRLEKDVSLLRDKSLNIALS
TERTNQDAASIRKVAEEVKEDLDSELKEKYSNVEQLIGQKAGGVVNAKKRAESLQQEAKE
LLLKASDKLQLLKDLEKSYEDNQRTLEEKAEKLVTLEAAVKELLQEISSKVTIYSTCLF
NT seq
5400 nt
NT seq
+upstream
nt +downstream
nt
atgttggaacttcagctctcggtgctgctcgttctgcaggtgtttatctacgctcaggat
gaggggggcatggtgggaggggcacaggatgacgtcagcctcccggagttcactgatgtg
tgcacagagggaagctgttacccagcaacaggagaccttctgattggccgagcccaccaa
ctgtcatccacctccacttgtggactgacccacccagaaccgttctgcatcgtaagccac
ctgcaggaggagaagaagtgtttcttgtgcgactcctcgactccgtatgatgagtttagc
agtccgaccagaggtcatcgcatcgagaatgttgtcaccacgtttgctcccaacagactg
aagacctggtggcagtctgagaacggtctggagaacgtcactctacagctggacctggag
gcagagttccatttcacacatctcattatgaccttcaagacgttccgacctgctgccatg
ttgattgagcgctctgcagactttgggaagaactggcagctttatcgttacttcgcctac
gactgtgagagctccttcccatctgtgtcacagggtccaatgcagaaggtggatgatgtc
atctgtgactcgcgttactctgacattgagccgtccactgaaggagaggttattttcaga
gttctggacccagtgtttaggatagaagatccctacagccccagaatccagaacatgttg
aagatcaccaacctgcgggtgaagttcaccagactgcacacgctcggagataacttgctg
gactctcgtatggagattaaagaaaagtattattatgccatctttgacatggtggtccga
ggaaactgcttttgctacggacacgctgctgagtgcgccccagtccaaggagccggccag
accagtgagggcatggttcatggtcactgcatgtgtaaccacaacactgaaggtctgaac
tgtgagaaatgtttggacttctaccacgaccttccttggaggccagccgaggggcgcaac
accaatgcctgcaaaaagtgtaactgtaaccaccacacctcctcatgtcactttgacatg
gccgtgttcgtggcttcaggaaacatgagcggaggagtctgtgacgactgccagcacaac
acggccggacacaactgtgagcggtgtgaaccgttttactttcaacatccagagagggac
gccagggaccccaacatctgtcaaccctgtaactgtgactctgtgggctcgctcaacgga
ggtctatgtgatgggacgacggatgttcgagccggtttgatcgctggccagtgtcgctgt
aaagtcaacgtggaaggagaacgctgcgagcgctgcaaacaggctcactacgggatgggc
cacgagccggaagggtgcaaggcgtgtacctgcagtccgctgggaacacttgctggagga
aatccctgcgacagtgaaacaggaagttgtttctgtaaacgtctggtgatgggccgagac
tgtgaccagtgtgtggctgaacactggggtctcagtaacgacatggacggctgtagacca
tgtgactgtgaccttggaggagccatcaacaaccagtgtgatcaagtgactggtcagtgt
gtctgcagggatcatatgttcggtagacgctgcgatcaggtggagtctggcttctacttt
attgctctggatcactacacctatgaagcagaggacgcaaagtttggacctggagtgaca
gtggtcccaagacaccaccctctggatcgcaatcccacctggacaggtatcggccttgtt
aatgttccagaaggggccttcctggagttctctgtggacaacattccccactccatggag
tacaacatccttatccgctacgagccccagctgcctgaccaatgggaggaagttctgatg
accgtgataagacctggaccaatcagagcagacagtcgctgtgttaacaccgtgcccgat
gacgaccaccagatgatctcacttcaccccggctcacgatatgcgtctcttgcgagacct
gtttgctttgagtctggtcagaactacacgatccgcctcagtctgcctctgtactcggcc
ctcagcgatgtgcagtctccttacacactcatcgactcgatcgtgttgatgccacactgc
aaaaacctggagatcttctccacctcagaaggaggagactccagtgggaacagtggttgg
gaaaccttccagcggtaccgatgtctggagaacagccagagcgtcactcggtctccgatg
accgacatctgcaggaacttcatcttcagcatctccgccatgttgcaccagggagctaga
gaatgccactgtgatcctcagggctcccttagcaccgtgtgtgatcccagcgggggtcag
tgtgagtgccgctccaatgtggtcggcaggaactgtgaccgatgtgctccgggaaccttc
gagttcggacccaacggctgcagagcatgttcctgtcaccctcagggttcacagagtttg
ttttgcagtgagctgactggaaagtgtgcctgtgtttttggagcgtatggccggcagtgt
gatcgttgcctgcccggtcattggggcttccccgcctgccgaccctgcacctgcaacgga
cacaccgacgactgcgaacccaacactgggcgctgcatcgactgccgggatcacagcacg
ggacatgcctgtgacaggtgtctggatggttactatggggaccccctgttgggatcaggt
gaccactgtcgcccatgtatgtgtcccgatggccccggcagcttgcggcagtttgcagga
agttgctaccttggtgacgacacccaacaggccgtttgcgtctgcgacaacggatacaga
ggttctcgctgtgacgaatgctcacctggttactatggaaaccctggagacgtggggggg
cagtgtcagccctgtcagtgcaacaacaacatcgacatgttggacccggagtcctgcgac
agtcgaaccggcgagtgtctgcgctgcctttaccacagcgagggctacgcctgccagagc
tgcaaacatggttactatggcaacgccctgctgcaagactgccagaaatgtgtctgtaac
cagctgggcagcgactcctccacctgtccatcttccggcgactgtcactgcgaccgcagc
aacgggcagtgccactgcctccccaacgtagtcggccagcactgtgaccgctgtgcgccc
gacacctggaacgtggcgagcggcagcggctgtgaggcctgcgcctgtgaccccagacac
tcgcatgggacgtcctgcaacgagatcagcggtcagtgttcctgccaacccggctttgga
ggaagaacttgcagcgagtgtcgagagctgttctggggagagccagaggtcaaatgtcac
gcctgtgactgtgatcctcggggaatctcacagccgcagtgtaacaaagatagcggtcac
tgcgtctgtgtggagggggtctctggcccgcgatgcgatgtctgcagccgcggcttctct
ggaacgttccccaactgccagcgctgccaccagtgcttcacagagtgggatgacgtcatt
ggtcagttgaccaatcagacacaccgcctcgtcaacaaggtcaacgccatgaaggccagc
ggtgtcagcggaccatacaagaagtccatcgatggcctggagaggagcgtcgctgacatc
tgggtcgtcctcaaccagaacccagcctctcaacctcttagcgagacccaggagctgctg
caacaggccagtgacctaatggggaccctgagccagatgttgaaccagactgagcagact
ctgatccaagtagaggaccaggactctgctgttgaaacaaaactggactctgtgatgtct
gatgcacataaactggagcaaactgttcaagagctgatggatcaggttgagttcatcaag
aactcagacatccgaggggcgaccgacagcatcactaggtacttccgtcagtccctagcg
gctgaagttggggcgaacgcctccaccatcaatccgggcagccctgtagaaacctcgatc
gctctacggcaactcacagaggccaaactgaaccaaagcagagaggaattcctgaggaaa
cacactgagcatgctcgcagactggacgacctggcaggagagctgcagactctggaccta
tcggagatcagccacaagacctgcggcagcccatcatcgggtcaggactcgtgcttgtct
tccccctgtggaggtttgggctgcgtggactctgagggtcagaccaggtgtggaggtgaa
gggtgtgatggggtgataactgtggccagcaacatctggaagaagacccaagactctgag
caggagatcatcagtgccatgcaggaagtggagaagctctcccagatggtgtcggaggcc
aaattcaaagcggacgaggcgaagctgagcgctcaggaggtcctgatgaagtccaacagg
acaaaacagaaagtcctgcagagcaacgaggagctgagagtcctcatcagacagatcaga
gacttcctcacacaggacgctgctgacctggagagcatcgagcttgtggccaacgaggtg
ctggccatgcagatgccgaccacaccggcccagctgcagaatctgacagaagacatccgt
cagaaggtgggagagctgggacacgtagaggacatcctgcagcagagcgccgccgacatc
cagagagccgagaacctgctggaccaggcccgcttagccagtgaggaggcagcagatgtt
aaggactctgcagagaaagtgaagcgagctcttgaagaagctcagaaggctcaaaccagc
gccagcagcgccatccagcaggccgctgccgacatccagaacaccaaccagctgctttct
tctgtggagttggaaacgtcccatgcagagttgaagctgaataactccacccagaggctt
cagaggctggagaaagacgtgtcactgctgagagacaaaagtctgaacatcgctctgagt
actgaacgcaccaatcaggatgcagcgagcatcagaaaggtcgcagaggaggtgaaggag
gacctggactctgagctgaaggagaaatattccaacgtggagcagctgattggtcagaag
gcagggggcgtggtgaatgctaagaagagggcggagtcattgcaacaggaagccaaagag
cttctgctgaaggctagcgacaaactgcagctgctcaaagacctggagaagtcttacgaa
gataatcagcggactttagaggaaaaggcagaaaagctggtgaccctagaggcggccgtg
aaggagctgcttcaggagatcagcagcaaggtcaccatttactccacctgtctcttctag
DBGET
integrated database retrieval system
