KEGG   Pungitius pungitius (ninespine stickleback): 119197053
Entry
119197053         CDS       T07626                                 
Symbol
dcaf13
Name
(RefSeq) DDB1- and CUL4-associated factor 13
  KO
K11806  DDB1- and CUL4-associated factor 13
Organism
ppug  Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:ppug00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:ppug03009]
    119197053 (dcaf13)
   04121 Ubiquitin system [BR:ppug04121]
    119197053 (dcaf13)
Ribosome biogenesis [BR:ppug03009]
 Eukaryotic type
  90S particles
   Other 90S particles
    119197053 (dcaf13)
Ubiquitin system [BR:ppug04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     119197053 (dcaf13)
SSDB
Motif
Pfam: Beta-prop_WDR5 Sof1 Beta-prop_THOC3 Beta-prop_IFT122_1st WD40 Beta-prop_WDR3_1st WD40_Prp19 WD40_CDC20-Fz Beta-prop_WDR3_2nd Beta-prop_EML_2 WD40_WDHD1_1st WDR55 Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 WD40_Gbeta EIF3I Beta-prop_EML Beta-prop_TEP1_2nd Beta-prop_EIPR1 WD40_MABP1-WDR62_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_WDR90_POC16_2nd DSE1_N ASA1 Beta-prop_Aladin WD40_RFWD3 Beta-prop_RIG_2nd Beta-prop_WDR75_1st eIF2A Beta-prop_IFT140_1st ANAPC4_WD40 MIOS_WD40 KNTC1_N Beta-prop_WDR19_1st NBCH_WD40 TRM82_WD Beta-prop_ACSF4 PEP5_VPS11_N
Other DBs
NCBI-GeneID: 119197053
NCBI-ProteinID: XP_037308900
LinkDB
Position
11:4568720..4576731
AA seq 445 aa
MKVKVLSRNPDDYVRETKLDIQRVPRNYDPTLHPFEVSREYTRALNATKLERLFAKPFLA
SLDGHRDGVNCMAKHTKSLSTLLSGSCDGEVKVWNLTKRECVRTLQAHEGFVRGMVVRSC
GTSFFTVGDDKTIKQWKMEAPGYGEEEEPLNTILGKSVFTGIDHHQKDAVFATCGQQVDI
WDEQRSSPIRSFTWGVDSFSAVRFNPVETELLASCASDRSIVLYDMRESAPLKKVIMTMR
SNTLCWNPMEAYYFTCCNEDYNLYTYDMRSLHRPVTVHMDHVSAALDVDYSPTGKEFVSA
SFDKTIRIFPKDSGRSREVYHTKRMQHVICIKWSLDNKFILSGSDEMNIRLWKANAAEKL
GALAPREREAVNYNQKLKEKFQHHPQIRRVAHHRHLPKSLYHQTKELRVMKEARRRKERN
VRKHSKPGSVPLLSEKEKHVVAVVK
NT seq 1338 nt   +upstreamnt  +downstreamnt
atgaaggttaaggtcctctcgaggaacccggatgattacgtccgggagaccaaactagat
attcaacgtgtccccagaaactatgacccgaccctgcatccgtttgaggtgagcagagag
tacacccgggccctgaatgccaccaagctcgagcggctcttcgccaagcctttcctggcc
tctctggatggacaccgggacggggtgaactgcatggccaagcacaccaagagcctctcc
accctgctctctggctcctgcgacggggaggtgaaagtgtggaatctgaccaaacgcgag
tgtgtccgcactctgcaagcacacgaaggttttgtccgtggaatggttgtccgctcttgt
gggacctccttcttcacggttggcgacgacaagacgatcaagcaatggaaaatggaggcg
cccggctacggagaggaggaggagccgctcaacacaatcctgggcaagtcggtcttcacc
ggaatagaccaccaccagaaggacgccgtgttcgccacatgtggtcagcaggtggacatc
tgggacgagcagaggagcagcccgatccgctcgttcacgtggggcgtcgacagcttcagc
gccgtgcgcttcaatcccgtggagactgaactcctcgccagctgcgcttctgacagaagt
atagtactgtacgacatgcgagaatcagcgccgcttaaaaaggttatcatgacgatgagg
agcaacacattatgctggaacccgatggaagcctattatttcacatgttgcaatgaggac
tacaacctctacacatacgacatgaggtccctgcatcggccagtcacagtgcacatggac
cacgtctccgcggcgctggatgttgactattctccaactgggaaggagtttgtctcggcc
agctttgacaaaaccatccgcatatttcccaaggacagcggccgcagccgggaagtctac
cacaccaaacgcatgcagcacgttatctgcattaagtggtcgttggacaacaagttcatc
ctgagcggctctgatgagatgaatattcgcctgtggaaagccaacgcggcggagaaactc
ggagcgctggccccccgagagagagaggctgtcaactacaatcagaagctgaaggagaag
ttccagcaccacccgcagatccgacgcgtcgctcatcacaggcatctgcccaagagcctg
taccaccagaccaaggagctgagggtcatgaaagaggctcgtcgcaggaaggagagaaat
gtccgcaagcacagcaagccgggaagtgttccattgttgtctgagaaggagaagcatgtt
gtggctgtggtcaaatag

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