Pungitius pungitius (ninespine stickleback): 119197053
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Entry
119197053 CDS
T07626
Symbol
dcaf13
Name
(RefSeq) DDB1- and CUL4-associated factor 13
KO
K11806
DDB1- and CUL4-associated factor 13
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ppug03009
]
119197053 (dcaf13)
04121 Ubiquitin system [BR:
ppug04121
]
119197053 (dcaf13)
Ribosome biogenesis [BR:
ppug03009
]
Eukaryotic type
90S particles
Other 90S particles
119197053 (dcaf13)
Ubiquitin system [BR:
ppug04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
119197053 (dcaf13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sof1
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_WDHD1_1st
WDR55
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_EML
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EIPR1
Beta-prop_WDR90_POC16_2nd
WD40_RFWD3
Beta-prop_RIG_2nd
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
eIF2A
Beta-prop_IFT140_1st
Beta-prop_IFT122_1st
ANAPC4_WD40
MIOS_WD40
KNTC1_N
Beta-prop_WDR19_1st
NBCH_WD40
Motif
Other DBs
NCBI-GeneID:
119197053
NCBI-ProteinID:
XP_037308900
LinkDB
All DBs
Position
11:4568720..4576731
Genome browser
AA seq
445 aa
AA seq
DB search
MKVKVLSRNPDDYVRETKLDIQRVPRNYDPTLHPFEVSREYTRALNATKLERLFAKPFLA
SLDGHRDGVNCMAKHTKSLSTLLSGSCDGEVKVWNLTKRECVRTLQAHEGFVRGMVVRSC
GTSFFTVGDDKTIKQWKMEAPGYGEEEEPLNTILGKSVFTGIDHHQKDAVFATCGQQVDI
WDEQRSSPIRSFTWGVDSFSAVRFNPVETELLASCASDRSIVLYDMRESAPLKKVIMTMR
SNTLCWNPMEAYYFTCCNEDYNLYTYDMRSLHRPVTVHMDHVSAALDVDYSPTGKEFVSA
SFDKTIRIFPKDSGRSREVYHTKRMQHVICIKWSLDNKFILSGSDEMNIRLWKANAAEKL
GALAPREREAVNYNQKLKEKFQHHPQIRRVAHHRHLPKSLYHQTKELRVMKEARRRKERN
VRKHSKPGSVPLLSEKEKHVVAVVK
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgaaggttaaggtcctctcgaggaacccggatgattacgtccgggagaccaaactagat
attcaacgtgtccccagaaactatgacccgaccctgcatccgtttgaggtgagcagagag
tacacccgggccctgaatgccaccaagctcgagcggctcttcgccaagcctttcctggcc
tctctggatggacaccgggacggggtgaactgcatggccaagcacaccaagagcctctcc
accctgctctctggctcctgcgacggggaggtgaaagtgtggaatctgaccaaacgcgag
tgtgtccgcactctgcaagcacacgaaggttttgtccgtggaatggttgtccgctcttgt
gggacctccttcttcacggttggcgacgacaagacgatcaagcaatggaaaatggaggcg
cccggctacggagaggaggaggagccgctcaacacaatcctgggcaagtcggtcttcacc
ggaatagaccaccaccagaaggacgccgtgttcgccacatgtggtcagcaggtggacatc
tgggacgagcagaggagcagcccgatccgctcgttcacgtggggcgtcgacagcttcagc
gccgtgcgcttcaatcccgtggagactgaactcctcgccagctgcgcttctgacagaagt
atagtactgtacgacatgcgagaatcagcgccgcttaaaaaggttatcatgacgatgagg
agcaacacattatgctggaacccgatggaagcctattatttcacatgttgcaatgaggac
tacaacctctacacatacgacatgaggtccctgcatcggccagtcacagtgcacatggac
cacgtctccgcggcgctggatgttgactattctccaactgggaaggagtttgtctcggcc
agctttgacaaaaccatccgcatatttcccaaggacagcggccgcagccgggaagtctac
cacaccaaacgcatgcagcacgttatctgcattaagtggtcgttggacaacaagttcatc
ctgagcggctctgatgagatgaatattcgcctgtggaaagccaacgcggcggagaaactc
ggagcgctggccccccgagagagagaggctgtcaactacaatcagaagctgaaggagaag
ttccagcaccacccgcagatccgacgcgtcgctcatcacaggcatctgcccaagagcctg
taccaccagaccaaggagctgagggtcatgaaagaggctcgtcgcaggaaggagagaaat
gtccgcaagcacagcaagccgggaagtgttccattgttgtctgagaaggagaagcatgtt
gtggctgtggtcaaatag
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