Pungitius pungitius (ninespine stickleback): 119197374
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Entry
119197374 CDS
T07626
Symbol
ercc3
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03022
Basal transcription factors
ppug03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
119197374 (ercc3)
09124 Replication and repair
03420 Nucleotide excision repair
119197374 (ercc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppug03021
]
119197374 (ercc3)
03400 DNA repair and recombination proteins [BR:
ppug03400
]
119197374 (ercc3)
Enzymes [BR:
ppug01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
119197374 (ercc3)
Transcription machinery [BR:
ppug03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
119197374 (ercc3)
DNA repair and recombination proteins [BR:
ppug03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
119197374 (ercc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_34
AAA_22
Motif
Other DBs
NCBI-GeneID:
119197374
NCBI-ProteinID:
XP_037309512
LinkDB
All DBs
Position
4:8844998..8850546
Genome browser
AA seq
783 aa
AA seq
DB search
MGKKDRGDREKKSKKRFYEEEEEEEDVVGGESQEAIPAAAGKQVDESSTKLDEYGAKDYR
VQMLLKNDHSSRPLWVAPDGHIFLEAFSPVYKYAQDFMVAIAEPVCRPNHVHEYKLTAYS
LYAAVSVGLQTSDIVEYLQKLSKTSVPDGIVQFIKLCTMSYGKVKLVLKHNRYFVESAFP
DVIQRLLQDSVIRECRLRTADGTDAELITEVIQSKSAISKSIEEKGAASTSQQPSDGPPS
TQQVPDDIFSYYEQMDKEEEEEEETQTVSCEIRQEMIEDLQKRCIQLEYPLLAEYDFRND
TVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKR
CLVLGNSSVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGCSVAISTYSMLGHTTKRS
WEAERVMEWMRSQEWGLIILDEVHTIPAKMFRRVLTIVQAHCKMGLTATLVREDDKIVDL
NFLIGPKLFEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIRTKKRILFYTMNPNK
FRACQFLIHFHEQRNDKIMVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNP
KINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAYFY
SLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEEDLMFSSRDEQQQLLQKVLAAS
DLDAEEEVVAGEVGGRPQFSRRTGTMSSMSGADDTVYMEYHSRGSKASALGKGIHPLFKR
FRK
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaaaaagatcgaggagaccgggagaagaagtccaaaaagcgtttctatgaggag
gaggaagaggaagaagatgtagtgggaggcgagtctcaggaggccatacctgctgctgca
gggaaacaggtggatgagtccagtaccaaactggatgaatatggcgccaaagactaccgg
gttcagatgctgttaaagaatgatcactcttcacggcccctctgggtggcgccagatgga
cacatcttcctggaagccttctcgcctgtgtataagtacgcccaggatttcatggtggcc
attgccgagccagtgtgcaggcccaaccacgtccacgagtacaagctgacagcctattcc
ctgtatgcagctgtcagtgtgggactgcaaacctctgatattgtagaatacctgcagaaa
ctcagcaagacatctgtgccggatggaatcgtgcagttcattaagctctgcacgatgagc
tatggcaaagtcaagctggtgcttaagcacaacaggtactttgttgagagcgccttcccc
gacgtgatccagcggcttcttcaggactccgtgatccgtgaatgtcgtctccgcactgca
gacggaaccgacgcggagctcatcactgaagtcatccagagcaagtcggcgatttccaag
tccattgaagaaaagggggctgcttctacctcacagcagcccagcgatggaccaccttcc
acccagcaggtccctgatgacatcttcagctactatgagcagatggataaagaagaagag
gaggaggaagagactcaaactgtgtcttgtgagattcgccaggagatgatcgaagacctg
cagaagcgctgcattcagctggagtaccccctcctggccgagtacgactttcggaacgac
acggtcaaccccgacatcaacatagacctgaagcccaccgctgtgctgcgaccctaccag
gaaaagagtttgcgcaagatgttcggcaacggccgtgctcgctctggggtcatcgtactg
ccctgcggagcgggcaaatctctggttggcgtgacagcggcgtgcacggtgcgcaaacgc
tgcctggtgttggggaactcctccgtgtcagtggagcagtggaaggcccagttcaagatg
tggtccaccattgatgactctcagatctgccgcttcacctcggacgccaaggacaagccc
atcggctgctcagtggccatcagcacctactctatgctgggtcacaccaccaagcgctcc
tgggaggcagagagagtcatggagtggatgcggagccaggagtggggactcattatcctg
gatgaggtgcacactatccccgccaagatgtttcgtcgggttctgaccattgtccaggca
cattgcaaaatggggctcactgccacactggtcagggaagacgacaagattgtagacctg
aacttcctaattggacctaaactatttgaggccaactggatggagctacagaacaatggc
tacattgccaaagtccagtgtgccgaggtgtggtgccctatgtccccggagttctacaga
gagtatgtggccatcaggacaaagaagcgtatcctgttttatacaatgaacccaaataaa
ttccgcgcttgccagtttctcatccacttccacgagcagcgcaatgacaagattatggtc
tttgcggacaacgtgtttgccttgaaggaatacgccatccgcctcaacaaaccctacatc
tatggtccaacctctcaaggggaacgaatgcagattttacagaacttcaaacacaacccc
aagatcaacaccatcttcatctccaaggttggagacacctcatttgacctgccagaagcc
aatgttctgatccagatctcctcccatggtggatcacgcagacaggaggcccagaggctt
ggcagagtgttaagagccaaaaaaggaatggtagcagaggagtacaacgcttatttctac
tcactggtgtcccaggacacacaggagatggcttactccaccaaaaggcagaggttcctg
gtggaccaaggttacagctttaaggtgatcacaaagttggcaggtatggaggaagaggac
ttaatgttctcctcaagagatgagcaacagcagctgcttcagaaggttctagcggcttca
gacctggacgccgaggaggaagtagtggccggggaagtgggcggacgacctcagttctca
agacggacaggaaccatgagctccatgtccggtgcagatgacacggtctacatggaatat
catagtcgaggcagcaaagcctctgcattgggcaagggcattcatccactgttcaagcgc
ttcagaaagtag
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integrated database retrieval system
