Pungitius pungitius (ninespine stickleback): 119197419
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Entry
119197419 CDS
T07626
Symbol
rad54b
Name
(RefSeq) DNA repair and recombination protein RAD54B
KO
K10877
DNA repair and recombination protein RAD54B [EC:5.6.2.-]
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
119197419 (rad54b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppug03400
]
119197419 (rad54b)
DNA repair and recombination proteins [BR:
ppug03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
119197419 (rad54b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
HDA2-3
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
119197419
NCBI-ProteinID:
XP_037309591
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All DBs
Position
11:complement(12721918..12733266)
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AA seq
930 aa
AA seq
DB search
MRRSGAPSQLLGNAVKKPRFVAPAASTSGLVAGFKPLSPKPGLGNALEKVQRSLAAPAKD
KTEYDVLPKAAQPLPALSRALALVLSTAESKENEASDHPNNVSEERTENNRPAGADGYPQ
LTSGSSQTTQSAPSSAFPLDGVRYFSVMWCKASKKKHKRWEGDAVLVTRGRTATLKDMEG
KDIGKGSGYKVSVLASLSEGETLMIGGKEVEVMGLISAEDFARGRCFQEVAVHNEEPRNA
APPPSRGSVSKRFCSPTLSGRADQSVPKRDEEQTCRPRHDPLAPGALVMPRPSANHQWLN
NKSGLPIVDVVVDPFLTNQLRPHQKDGILFLYECVMGLRVGGCYGAILADEMGLGKTLQS
VALSWTLLKQGPYGGKAVAKRVLVVTPGSLVHNWAAEFNKWLGRERISVFSVDQDHRIEQ
FVISPLHSVLVISYEMLLRSLEQVQKVEFGLVICDEGHRLKNSSIKTSSALSSLSCSRRV
ILTGTPVQNDLQEFYAIIEFVNPGILGSSTAYRKVYEEPILRSRQPSCSREESALGEERA
AELSRLTGMFILRRTQEIINRYLPPRLDWTLFCKPSPLQRELYTRLLSHRVFRACLQGST
QTHTHLACITALKKLCNHPGLLYSSAKEKADLCASENSLYEGLVELFPESYSSGGFNTAD
SGKLLVLADLLTAIRQLGPSDRVVVVSNYTQTLDLLQDLCVHVGYTFCRLDGHTPTNQRQ
RLVDGFNSAYSQNFVFLLSSKAGGVGLNLVGASHLVLYDIDWNPANDIQAMARVWRDGQK
KPVHIYRLLTAGTIEERIFQRQVSKQGLSGTVVDLGKRAEHTSFSTSELRDLFSLTDTLS
LTHDLLNCSCVMDGSVQPVLEEEQQVSDRPCQLGRQGDRGGAPQKHLSMSELMQWRHFSG
DTHTFSDPYLDLARNHITFAFQTTISHTAR
NT seq
2793 nt
NT seq
+upstream
nt +downstream
nt
atgcggcgctcaggagctccgagccagctcttgggtaatgctgtgaaaaagccccggttt
gtagcccctgcagcatcgacatccggtctcgtagctggattcaagcccctttcacctaaa
cctggtttaggaaatgcactggaaaaggtccagagaagtctagcagcaccagctaaagat
aaaacagagtatgatgttctgcccaaagctgctcagcctcttccagccttgtcgagggct
ctggctcttgttctcagcacagcagaaagtaaggaaaatgaggcgtcagatcatcccaac
aatgtctcggaagagcgcacagaaaacaacagacctgcaggagcggatggataccctcag
ttgacctccgggtcttctcaaaccactcagtctgctccgagttcggccttccctctggac
ggcgtgcgctactttagtgtgatgtggtgtaaagccagcaagaagaaacacaagcgctgg
gagggcgacgcggtcctggtcaccagaggacgcacggccacgctgaaggacatggagggc
aaggacatcggaaagggaagtggctacaaggtgtctgtgctggcctccctgtccgaggga
gagaccttgatgatcggagggaaggaggtggaagtgatggggctcatatctgcagaggac
ttcgccagggggcgctgctttcaggaggtggcggtacacaatgaggagccgcgtaatgca
gctccacctccctctcgtggctcggtgtccaagcgcttctgctccccaacgctgtctggg
agagcagatcaatctgtgcccaaacgggatgaggaacagacctgcagacctcgccacgac
ccactggctccaggtgcgctggtcatgcctcgtccctctgccaatcaccagtggttaaac
aacaagtctgggctcccaatcgtcgatgttgttgttgacccgttcctgaccaatcagctg
cgtccgcaccagaaagatggcattctctttctctatgagtgtgtcatgggtttgagagtt
gggggttgctatggggccattctggcggatgagatgggtctggggaagaccctccagagc
gtggcactctcctggacgctgctcaaacaaggaccgtacggagggaaagccgtcgctaag
cgggtgctggtggtcacaccaggcagcctggtgcacaactgggccgcagagtttaacaag
tggctgggccgtgagaggatcagcgtcttcagtgtggatcaggaccaccggatagagcag
tttgtgatctcccctctgcacagcgttcttgtgatcagctatgaaatgctgctgcgctcc
ctggagcaggttcagaaagtggagtttggtcttgtgatttgtgacgagggccacagacta
aagaacagcagcatcaaaacgtcgtcggccctcagcagcctgagctgtagtcgcagagtc
atactaacaggcaccccagtacagaatgacctgcaggagttctatgctatcatagagttt
gtgaacccggggatcctcgggtcgtccactgcgtacagaaaagtctacgaggagccaatt
ctgcgctccagacaaccctcctgctcgagggaggagagcgctttgggagaggagcgggcc
gcggagctctcccgcctgaccggcatgttcatcctgagacggacacaggaaatcatcaac
cgctaccttcctccgcgactcgattggacgttgttctgcaaaccgtcccctctgcagcgg
gagctgtacacgcggctgctctcccacagagtcttcagagcctgccttcagggctccaca
caaactcacacacacctggcctgcatcaccgcgctgaagaagctgtgcaaccacccgggt
ctgctctactcctctgccaaggaaaaggcagacctttgcgcctcagagaactctttatac
gagggtttggttgagctcttcccagaatcctactcttcgggtggattcaacacagctgac
tctggaaaacttctggttctggcggacttgctgactgccatcaggcaactcggcccgtca
gacagggtggttgtagtatccaactacactcagacacttgacctgctccaggacttgtgt
gtgcacgtgggctacaccttctgccgacttgacggccacacccccaccaaccagagacag
cggctggttgacggtttcaacagtgcctactctcagaactttgtgtttctactgagctcc
aaagcaggtggagtggggcttaatctggtgggggcttcccacctggtgctgtatgacatt
gactggaaccctgcaaatgacattcaggccatggctcgagtgtggagagatggacagaag
aagcctgtgcacatctatcgtctcctcactgcaggcactattgaggagcggatattccag
agacaagtgtccaaacaagggctctctgggacagtggttgacctgggcaaaagggcggag
cacaccagcttctccaccagcgaactgcgagatcttttcagcctgacggacacactctcc
ctaacccacgacctgctgaactgcagctgtgtcatggacggctcggtccagcctgtcttg
gaggaagagcagcaggtgtctgataggccgtgccagctcggtcgtcaaggcgaccgcgga
ggagcgccgcagaagcatctcagcatgtccgagctaatgcagtggagacatttctcgggt
gacacgcacaccttctcagacccttaccttgacctggcacgaaaccacatcaccttcgcc
ttccagaccaccatctctcacacagcgcgctga
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