Pungitius pungitius (ninespine stickleback): 119197506
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Entry
119197506 CDS
T07626
Symbol
ddx61
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119197506 (ddx61)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppug03019
]
119197506 (ddx61)
03036 Chromosome and associated proteins [BR:
ppug03036
]
119197506 (ddx61)
Enzymes [BR:
ppug01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
119197506 (ddx61)
Messenger RNA biogenesis [BR:
ppug03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
119197506 (ddx61)
mRNA degradation factors
5'-3' decay
Decapping complex
119197506 (ddx61)
Chromosome and associated proteins [BR:
ppug03036
]
Eukaryotic type
Gene silencing
piRNA pathway
119197506 (ddx61)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
119197506
NCBI-ProteinID:
XP_037309773
LinkDB
All DBs
Position
11:20279701..20286362
Genome browser
AA seq
481 aa
AA seq
DB search
MATARTANPAPMIGMNKPANGQFRGQTGVLAAGQQPNALQKMTSIPHSSGGIKFGDDWKK
CLELPPRDTRMRTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPVQEESIPIALSGR
DILARAKNGTGKSGAYLIPLLERIDLKKDHIQAIVMVPTRELALQMSQISIQLSKHLGGV
KVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKMDKAQLIVMDEADKLLSQ
DFVVLIEDIISFMPKDRQILLYSATFPISVQKFMSKHLKKPYEINLMEELTLKGITQYYA
YVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAKMMQEYRN
RVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLA
INLITSEDRYNLKNIEDQLVTDIKPIPSSIDKSLYVAEFHSVDPDADDCDAGAKSKELGA
I
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atggcgacagcaaggacggcaaacccagcacccatgataggaatgaacaaaccagcaaac
gggcagttcagaggccagacgggggtcctcgccgcaggccaacagcccaacgccctccag
aaaatgaccagcattcctcatagcagtgggggcatcaagtttggtgatgattggaagaag
tgcctggagcttcctccaagagacacccggatgagaacttcggatgtgacatcaactaag
ggaaatgaatttgaagactactgcctaaagcgggagctgcttatggggatctttgaaatg
ggatgggagaaaccgtcccctgtccaggaggaaagcatccccatcgctctgtcgggcaga
gacattttggctcgggccaagaatggcacaggaaagagtggagcgtacctcatccccctc
ctggagaggatagacctgaagaaggatcacatacaggccatagtcatggtgccaacaagg
gagttggccctgcagatgagccagatcagcatccagctcagcaagcacctcggcggtgtg
aaggtcatggctaccacgggtggcaccaatttgagggatgacattatgcgtcttgatgag
accgtgcatgtagtgattgctacaccaggcaggatactggaccttatcaagaagggtgtg
gctaaaatggataaagcccaattgattgtgatggacgaggcagataagctgctctcccag
gactttgtggttctgattgaagatataatcagcttcatgccaaaggatcgtcagattctg
ctctactcggccacgttccccatcagcgtgcagaaattcatgagcaagcatctgaagaag
ccgtacgagatcaacctgatggaggagctgaccttgaagggcatcactcaatactacgcc
tatgtgactgaaagacaaaaagtccactgtctcaacacgctgttttctaggcttcagatc
aatcagtccatcatcttttgtaactcaacccagagggttgaacttctggccaagaaaatc
acccaactgggttactcgtgcttctacattcatgcaaagatgatgcaggaatacaggaac
cgcgtgttccacgacttcaggaatggattgtgcagaaacctggtctgcacagacctgttc
actcggggaattgacatccaggcagttaatgtggtcataaacttcgacttccccaaaaat
gcagagacctacctgcaccgcatcggacgatcagggcgttttggtcacctgggtctggct
atcaacctgataacttcagaagatcgctacaacctgaagaatattgaggatcaattggtc
actgacattaagcccatccccagtagcattgacaagagcctgtatgtggcggagtttcac
tccgttgacccagatgcagacgactgcgacgctggcgcaaaaagcaaagaactcggagcg
atctga
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