Pungitius pungitius (ninespine stickleback): 119197529
Help
Entry
119197529 CDS
T07626
Symbol
cnot3a
Name
(RefSeq) CCR4-NOT transcription complex subunit 3a isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119197529 (cnot3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppug03019
]
119197529 (cnot3a)
Messenger RNA biogenesis [BR:
ppug03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119197529 (cnot3a)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
119197529 (cnot3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
119197529
NCBI-ProteinID:
XP_037309808
LinkDB
All DBs
Position
11:complement(14515149..14522632)
Genome browser
AA seq
905 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQRE
KEDTGQWLTTTIDTLNMQVDQFESEVESLSVQTRKKKGDKDKQDRIEELKRLIERHRFHI
LMLETILRMLDNDSVPVDAIQKIKDDVEYYIDSSQDPDFEENEFIYDDIDLEDIPAALVA
TSPSGQGNLEDELFLNSSSTPTSTTSSSPIPPSPATCTAENSEDDKKRGRSTDSEVSQSP
VKNGPPSLLSSFSSSTTSGSSSSSSLVSIASVVGGIPVVPPSSSLIGSFSSAVQQHQHQP
AQQQQQPQQTNQPQQQQQPPQTKPPAPSNNAPSPPSIPHLPASTAPSLPAPSTPSSSAIS
SESPLTSAPSPASTLGLGLGLSKIGLMGSSGGSQMSALGLVVHQSPLNTMAGLISGSAPA
PYAQAAASGGLGLSSSTLSSISVESSTSIPSSSGVTTNGAVVGLGLLGSGPAHGSLSGSI
LGLVPGQNLELVASPLPPSSVSTTPGVVSMMGGNGGNGSVVGGGGVNAAPARPPSGLKQN
GNTSYSAVVAENSTESALSTPSQSQSSQPSSLSSSASQPSMDNGPSLISSITLPPSSPSP
SFSDSTPGGGSLLNGPHSYTQASDALKAPEPLSSLKAMAERAALGSNLDGEITNLHLTDR
DIFSSSSAPPGTPAAPQPSVSEVSIPPSLGVCPLGPTPLPKDQLYQQAMQESAWTHMPHP
SDSERIRQYLMRNPCPTLPFHHQIPPHHSDSIEFYQRLSTETLFFIFYYLEGTKAQYLSA
KALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLE
DRDLQ
NT seq
2718 nt
NT seq
+upstream
nt +downstream
nt
atggctgacaagagaaaactacaaggtgagatcgacagatgtttgaaaaaagtagctgaa
ggtgtagaacagtttgaagacatctggcaaaaacttcacaatgcagccaatgcaaaccag
aaggaaaaatatgaggctgacctcaagaaagagattaaaaaactacagcgattgagagat
cagataaaaacatgggtggcctcaaacgagatcaaagacaaaaggcagctagtcgagaac
cgcaaacttatagagacgcaaatggagcggttcaaggtggtggaacgggaaacaaaaaca
aaagcatactctaaagaaggcttggggctcgctcagaaagtggatcccgctcagagggaa
aaggaggatacgggacagtggctaacaactacaatagacactctaaatatgcaggtggat
caatttgaaagcgaggttgaatctctttcggttcaaacgagaaagaagaagggcgataaa
gataagcaagaccgtattgaggagctcaagcggttgatagagaggcatcgattccacatt
ctcatgttggagaccattttacgaatgctggacaatgactctgtaccagtggatgcaatc
cagaagatcaaggatgatgtcgaatactacattgattcctcccaagacccggactttgaa
gagaacgagttcatatatgacgacatagacctggaagacatccccgccgccttagttgca
acttctccatccggtcaaggcaatttggaggacgagctgtttctcaactccagcagcact
ccgacgtccacaacctcctcttcacctattcctccgtcaccggccacttgcactgctgag
aactctgaggacgataagaaaagaggacggtcgacagacagcgaggttagtcagtcacct
gtgaagaacggccctccatccttgctgtcttcattctcctcgtccaccacctctggatcc
tcctcgtcctcctcccttgtgtccattgcaagtgtcgtcggaggcattcccgtcgtccct
ccgagcagcagtctcatagggagcttcagcagtgcggtgcagcaacatcagcatcaacct
gcgcaacagcagcaacaacctcagcagaccaatcaaccgcagcagcagcagcagccacct
caaacaaaacccccggctccttcaaacaatgcgcccagcccgcccagcatcccccatctc
ccagcctcaactgcaccctctctccccgcgcccagtacgcccagttcatcagccatcagc
tcggagtctccgctcacatccgcgccaagccccgcgtccactttggggctggggctggga
ttgagcaaaattggcctgatggggtccagcggtggcagccaaatgtctgctttgggcctg
gttgtccaccagtctcctttaaacacgatggcggggctcatttcaggctccgcccctgcg
ccgtacgctcaggcggcagcatcgggaggcttgggtttgagcagcagcaccctgtccagc
atctccgtagagagcagcacttccatacccagctccagtggagtcaccaccaacggggcg
gtggtaggcctcggtctgctgggttccggccccgcccacggctctctgagtgggagtatt
ctgggactggttcctgggcaaaacttagaactagtcgcctctccgttgcccccaagttct
gtcagcactacccccggagtggttagcatgatgggaggcaacggagggaatggcagcgtg
gttggaggaggaggagtgaatgctgctcctgctagaccacccagtggactgaagcaaaat
ggaaacacaagttacagtgccgtagtggcagagaactcgacagaatccgctctcagcaca
ccgagccagtcgcaaagcagccaaccgtcatctctcagttcttcagccagtcagcctagc
atggacaacggtcccagtttaatcagctccatcaccctcccgcccagctctccgtccccc
tcgttctcagacagcacccccgggggagggagtcttctcaacgggcctcactcctacact
caggcctctgacgctctcaaggcccctgaacctctcagttctctgaaggcaatggctgag
agagcggcgctgggatcgaacctggacggagagattacaaacctgcatctaacagaccga
gatatcttctctagttcatctgcaccgcccggcacacctgccgcccctcagccgtccgtg
tcggaggtcagcatccccccctcgctcggcgtctgtccgcttggccccacccctctcccc
aaagaccagctctaccagcaggccatgcaagaatctgcatggactcacatgccacacccc
tctgactctgagaggatcagacaatacctgatgaggaatccatgtcccaccttgcccttc
caccatcagataccacctcaccactccgactctatagagttctaccagcgactgtctaca
gaaacgctctttttcattttctactacctggagggcacaaaggctcagtatttgtctgcg
aaggctctgaagaaacagtcgtggaggtttcataccaagtacatgatgtggttccagagg
cacgaggagccaaagaccataactgatgaatttgaacagggcacttacatctactttgac
tatgagaaatggggccagaggaagaaggaggggtttacctttgagtacaggtacctcgaa
gaccgggacctgcagtga
DBGET
integrated database retrieval system
