Pungitius pungitius (ninespine stickleback): 119197592
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Entry
119197592 CDS
T07626
Symbol
dhx16
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119197592 (dhx16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ppug03041
]
119197592 (dhx16)
Enzymes [BR:
ppug01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119197592 (dhx16)
Spliceosome [BR:
ppug03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
119197592 (dhx16)
Complex C
U4/U6.U5 tri-SnRNP related factors
119197592 (dhx16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_30
Cas3-like_C_2
nSTAND3
Flavi_DEAD
PWI
ABC_tran
Motif
Other DBs
NCBI-GeneID:
119197592
NCBI-ProteinID:
XP_037309942
LinkDB
All DBs
Position
11:complement(20001331..20010961)
Genome browser
AA seq
1049 aa
AA seq
DB search
MANLEQWVNDRLHDILGLSDRYVSQFMIGIARKSSSSQDFVTRLEETGTIDIEPSVVTFA
QELFDKIPRKQVVEKPARALEREAIEMDKKNRTYTLLEDSDSDGEAVQEKDKGKKKKDKD
RGNRRKHIRKKKESASSSEDEAPKRGEESPIKEKEEEEEEWEKEERERQQDIEERDAFAE
RVKQKDKDKTRNITERTDKKAYEEAQKRLKMAEDDQKNMLPELRKRSRWDYLKKRESEKL
EDLEAEIKDDEYLFHTEELTEREKKELEYKRTLRDLAKDYKSAGVKEHEERKNRYYMPEE
KRSKEVPQRDLELEETPMELGGEQGRWEEERLKTASLSFGAKREREQGMRREQERYQLIL
EEDEMIEFVSTAMTMKGTRTEEEQEALVLSQAELKKQSMQEVRRSLPIFPYREDLLAAIN
QHQILVIEGETGSGKTTQIPQYLLEDGYTKGGMKIGCTQPRRVAAMSVASRVAQEMSVKL
GNEVGYSIRFEDCTSERTVLKYMTDGMLLREFLTEPDLASYSVVIIDEAHERTLHTDILF
GLIKDIARFRSDLKVLVASATLDTERFSCFFDDAPVFRIPGRRFPVDIFYTKAPEADYLE
ACVVSVLQIHVTQPTGDVLVFLTGQEEIETCCELLQERCRRLGSKIAELLVLPIYANLPS
DMQAKIFNPTPPGARKVVVATNIAETSLTIDGIIYVIDPGFCKQKSYNARTGMESLIVTP
CSRASANQRAGRAGRVAAGKCFRLYTAWAFKHEMEETTVPEIQRTNLGNVVLLLKSLGIN
DLIHFDFMDPPPHETLVLALEQLYALGALNHLGELTKLGRRMAELPVDPMLSKMVLASEQ
YKCSEEVLTIAAMLSVNNSIFYRPKDKVVHADNARMNFVVPGGDHLVLLNVYTQWLESGY
STQWCYENFIQFRSMRRARDVRDQLEGLMERIEVEVVSSQGDSLPIRKAVTAGYFYHTAR
LSKGGYKTVKHQQTVYVHPNSSLFEEQPRWLIYHELVFTTKEFMRQVIEIDSGWLLEVAP
HYYKSKELEDSSSKKMPRKQGKAKEELGQ
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atggccaatctagagcagtgggtgaacgaccgtctccatgacatcctgggtttgagtgac
agatatgtgtctcaattcatgatcggcatcgcgcggaaatcatcgagttctcaagacttt
gtgactcgtctcgaggagacgggcacgattgacatcgaaccgagcgtggtgacgtttgcc
caagagctcttcgacaagattcctcgtaagcaagttgttgagaaaccagcgcgggcgttg
gaacgcgaagccattgagatggacaagaagaatcggacgtacacgttactcgaggacagc
gacagcgacggagaagctgtgcaggaaaaggacaaagggaaaaagaaaaaggacaaagac
agaggaaacaggaggaagcacatcagaaagaagaaagagagcgcgtcgtcgagtgaggac
gaagcaccaaaaaggggtgaagagtctcccataaaggaaaaggaagaggaagaggaagag
tgggagaaggaagagagagagcgacagcaggacattgaagagagagatgcgtttgctgag
cgagtgaagcagaaagacaaagacaagacccgtaacataacggagaggacggacaaaaag
gcttacgaggaagctcagaagaggctgaagatggccgaagacgatcagaagaacatgttg
ccagagctgaggaagcgctctcggtgggattatctcaagaagagagagtccgagaagctg
gaggacctggaggcagagatcaaagacgacgagtaccttttccacacagaggagctgacg
gagagggagaaaaaagagctggaatacaaacgcaccctgcgggacctggctaaggactac
aagtcggccggcgtcaaggaacacgaggagaggaagaaccgatactacatgccggaagag
aagagaagcaaggaggtgccccagagggacctggagctggaggaaactcccatggagctg
ggaggggagcaaggccgctgggaggaggagaggctgaagacggcctccctcagcttcgga
gccaagagggagcgagagcaagggatgagacgggagcaggagaggtaccagctgatcctg
gaggaggacgagatgatcgaatttgtcagcactgccatgaccatgaagggaacccggacg
gaggaggagcaggaggcgctggtgctgtcccaggcggagctgaagaaacaatccatgcag
gaggtccgacgcagcctccccatcttcccctacagagaggacctgctcgccgccatcaac
cagcatcagattctagtcatcgagggggagacgggctcaggaaagaccactcagatccct
cagtacctcctggaagatggctacacgaaaggaggcatgaagatcggctgcacgcagcct
cgcagagtggcagccatgtcggtggcgtccagagtggcacaggagatgagcgtcaagctc
gggaacgaggtgggttacagtattcgctttgaggactgcacatcggagaggacggtgctg
aagtacatgacggacggcatgctgctccgagagtttctcaccgagcccgacctcgccagc
tacagcgtggtcatcatcgacgaagcccacgagcgaacgctccacacggacatcctgttc
gggcttatcaaggacatcgccaggttcaggtcggacctgaaggtgctggtggcgagcgcc
actctggacacggagcgcttctcctgcttcttcgacgacgcgcccgtcttcaggatccct
ggcaggaggttccccgtcgatattttctacaccaaagccccggaggccgactacctggaa
gcttgcgtggtgtcggtgctgcagatccacgtcacccagcccaccggagacgtgctggtg
ttcctcactggacaggaggagattgaaacgtgttgcgagctgctccaggagcgatgcagg
cggctcggatccaagatagcagagctgctggtcctccccatctacgccaacctgccatcc
gacatgcaggcgaagatcttcaaccccacccccccaggggcccgcaaggtggtggtggct
accaacatagcggaaacctcgctgaccatagacgggatcatctacgtcatcgacccgggc
ttctgcaaacagaagagctacaacgcccgcaccggcatggagtcgctcatcgtcacgccc
tgctcgcgggcttcggccaaccagagggccggccgcgcaggcagagtggctgctgggaaa
tgcttcaggctctacacagcctgggccttcaaacacgagatggaggaaacaacggtgccc
gagattcagaggaccaacttgggaaatgtggtcctcctgctgaagagtttgggaatcaac
gacctcattcacttcgacttcatggacccacctcctcacgagactctggtcttggcgctg
gagcagctctacgccctcggagcactgaaccacctgggggagctcaccaagctgggtcgc
aggatggccgagctcccggtggaccccatgctgagcaagatggtcctggcctccgagcag
tacaagtgttccgaggaggtgctgacgatagccgccatgctgtcggtcaacaactccatc
ttctaccggcccaaagacaaggtggtgcacgccgacaacgccaggatgaacttcgtggtg
ccgggaggagaccacctggtgctgctcaacgtctacacacagtggttggagagcggttac
tccacgcagtggtgctacgagaacttcatccagttccgctccatgaggagagcccgggac
gtgcgggaccagctggagggtctgatggagcgcatcgaggtggaggtggtgagctctcag
ggggacagcttgcccatccgcaaggcggtgacggcggggtatttctatcacacggcgcgg
ctgagcaaaggcggctacaagacggtgaagcaccagcagacggtctacgtccatcccaac
agctctctgttcgaggagcagccgcgctggctcatctaccacgagctggtgttcaccacc
aaggagttcatgagacaggtgattgagatagacagcggctggctgctggaagtggctcct
cactactacaagagcaaagagctggaggacagcagcagcaagaagatgccccgcaagcag
ggcaaagctaaggaggagctcggccaatga
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integrated database retrieval system
