Pungitius pungitius (ninespine stickleback): 119197596
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Entry
119197596 CDS
T07626
Symbol
prdm1a
Name
(RefSeq) PR domain zinc finger protein 1a isoform X1
KO
K24501
PR domain zinc finger protein 1 [EC:2.1.1.-]
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ppug03000
]
119197596 (prdm1a)
Transcription factors [BR:
ppug03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
119197596 (prdm1a)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PRDM2_PR
zf-H2C2_2
zf-C2H2
SET
zf-C2H2_4
C2CH-3rd_BIRD-IDD
Zf-C2H2_ZNF451_C
zf-C2H2_6
zf-C2H2_jaz
zf-met
zf-C2HE
B129_C2H2-zf
FOG1-like_PR
Motif
Other DBs
NCBI-GeneID:
119197596
NCBI-ProteinID:
XP_037309945
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All DBs
Position
11:complement(19877102..19897050)
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AA seq
837 aa
AA seq
DB search
MCGWDQSSTATSHSSAMLTSEGAHAMEQDDAHHRAKMASAATTTIPGADMEMEEEADMTR
WAEAEFEEKCLYVVKDTPWKAESDTATRAEASLPRNLAFKHPADSKEVVGVCSREYIPKG
TRFGPLVGEIYTADSVPKDANRKYFWRIYEGPDFHHFVDGLDETRSNWMRYVNPAHSAAE
QNLAACQNGAEVFFYTVRPVPAGAELLVWYCHDFARRLHYPPSGELMMQKLKQSLLEVKQ
QQVTDEERLVVASSPSPAAPAPTPPPRREHSVLSILRGTTSSSSSTSSPSSTRSSAKREP
SRPLPTRPRCADSPERPVYPRALYPPLRPHPHVPEDFLHKPVQLGYPATRSPGNQSSTTP
SPSARSSPDSSPQGSPSASFYPAGLGSYPGYSPPPAPLSSSFYPPGAPYSRYLLPHHYPL
PGGGVPAVGGIFPRMYPLYSSLLPPHVPLLHSDTAGRRFLMPDHVHPASISAHRDFLLPR
PTSAFQTATSLKDKAAPHRPYPAHPPPHRPAPHHAPTSGSPTAGAAPPNERVPTKPTSAL
LGNSGGEHCSDDEAVNLSKAKRGPGSAGYKALPYPLKKQNGKIKYECNVCSKTFGQLSNL
KVHLRVHSGERPFKCQTCNKGFTQLAHLQKHFLVHTGEKPHECQVCHKRFSSTSNLKTHL
RLHSGEKPYHCKLCPAKFTQFVHLKLHKRLHSRERPHKCPHCHRHYIHLCSLRLHLKGYC
PAAASGQTASEELQRANEEIERFDVSEHAEQLEQLQGGAEVEAVLEKQVLGLLWREPDLK
ASRFHGHHKGGASDLAPAGYGAYKSPSETSVIKMRRGAGVLPLPANVTVKQESDDHA
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
atgtgcggatgggaccagagttccacggcgacctctcatagctcggccatgttgaccagt
gagggggcgcacgccatggagcaggacgacgcgcaccaccgggccaagatggcctccgcc
gccaccaccaccatcccgggggccgacatggagatggaggaggaggcggacatgacgcgg
tgggcggaggcggagttcgaggagaagtgcctgtacgtcgtcaaggacacgccgtggaag
gcggagtcggacacggcgaccagggccgaggcgtcgctgccccggaacctcgccttcaaa
cacccggccgacagcaaggaggtggtcggcgtgtgcagcagggagtacatccccaaagga
acccgcttcggccccctggtgggggagatctacacggccgacagcgttcccaaggacgcc
aaccgcaagtacttctggaggatctacgagggcccggacttccaccacttcgtggacggc
ctggacgagacccgctccaactggatgcgctacgtcaacccggcccactcggccgccgag
cagaacctggcggcgtgtcagaacggcgccgaggtcttcttctacacggtgaggcccgtc
cccgccggcgccgagctgctggtgtggtactgccacgacttcgcccgccggctccactac
ccgccgtccggagagctgatgatgcagaaactcaagcagtccctcctggaggtcaagcag
cagcaggtgaccgacgaggagcgtttggtggtggcctccagcccctcccccgccgcgccg
gcccccacgccgccgcccaggagggagcacagcgtcctctccattctccgcggcaccacc
tcctcctcctcctccacctcctccccctcctccacccgctcgtccgcgaagagggagccc
agccgaccgctcccgacccgcccgcgctgcgccgacagccccgagcgccccgtgtacccc
cgcgccctctacccgcccctccggcctcacccccacgtccccgaggacttcctccacaaa
cccgtccagctcggttaccccgcaacccgttcccccggcaaccagtcctccaccaccccc
agcccgtcggcaaggagcagcccggacagcagcccccaggggagcccctcggcctctttc
taccccgccggactgggttcttaccccggttactccccgccacctgcccccctctcctcc
tccttctaccctccgggcgccccttactcgcgctacctccttccccatcactaccctctc
cccggcgggggcgtccccgccgtgggagggatctttcccaggatgtaccccctgtacagc
agcctcctgcccccccacgtgcccctcctgcactccgacacggccggcaggcgcttcctg
atgcccgaccacgtccacccggcctccatctctgcccacagagacttcctcctcccccgc
cccaccagtgccttccagacggccacctccctcaaggacaaggcggcgcctcaccgccct
tacccggcgcaccctcccccgcacagacccgccccccaccacgcccccaccagcggctcc
ccgacggcgggcgccgcgccgcccaacgagcgggtgcccaccaagcccacctcggccctg
ctgggcaacagcggcggcgagcattgctccgacgacgaggccgtcaacctgagcaaggcg
aagcgcggcccgggctcggcgggctacaaggcgctgccgtacccgctgaagaagcagaac
ggaaagatcaagtacgagtgcaacgtgtgcagcaagaccttcggccagctgtcgaacctg
aaggttcaccttcgagtccacagcggagagagacccttcaaatgtcagacctgtaacaaa
ggcttcacgcagctggctcacctgcagaaacacttcctggtccacactggggagaaacca
cacgagtgccaggtgtgtcacaagcgcttcagcagcaccagcaacctgaagacccacctg
cgcctccactcgggggagaagccctaccactgcaaactctgcccggccaagttcacccag
ttcgtccacctcaagctgcacaagcggctccactcccgcgagcgcccgcacaagtgcccc
cactgccaccgccactacatccacctgtgcagcctgcggctccacctgaagggctactgc
ccggccgccgcctccggccagaccgcctcggaggagctgcagcgcgccaacgaggagatc
gagcgctttgacgtcagcgagcacgccgagcagctggagcagctgcaggggggcgcggag
gtggaggccgtgctggagaagcaggtgttgggtttgctctggcgggagcccgacctcaag
gcctcccgcttccacggccaccacaagggcggcgccagcgacctcgcgccggcgggttac
ggcgcgtacaagtccccgagcgagacgtcggtcatcaagatgcggcgcggcgccggcgtc
ctgccgcttcccgccaacgtcaccgtcaagcaggagtcggatgatcacgcgtga
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