Pungitius pungitius (ninespine stickleback): 119197983
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Entry
119197983 CDS
T07626
Symbol
cdkal1
Name
(RefSeq) threonylcarbamoyladenosine tRNA methylthiotransferase isoform X3
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:
2.8.4.5
]
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ppug03016
]
119197983 (cdkal1)
Enzymes [BR:
ppug01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
119197983 (cdkal1)
Transfer RNA biogenesis [BR:
ppug03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
119197983 (cdkal1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM
TraT
Motif
Other DBs
NCBI-GeneID:
119197983
NCBI-ProteinID:
XP_037310634
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All DBs
Position
11:239212..408063
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AA seq
565 aa
AA seq
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MPSACDSLIDDIEDMVSSSDPTPHERQSARKSIIPRSRKKNELLSHEELQADSLIPGTQK
IWMKTWGCSHNNSDGEYMAGQLAASGYTMTDDPSDADLWVLNSCTVKNPAEDHFRNSIKK
AQDQQKKVVLAGCVPQAQPRMDYLKGLSIIGVQQIDRVVEVVDEAVKGHSVRLLGQKKDG
GRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPIEDLVERARQS
FREGVCEIWLTSEDTGAYGRDIGTDLPTLLWRLVEEIPEGAMLRLGMTNPPYILEHLEEM
AMILNHPRVYAFLHVPVQSASDSVLMDMKREYCVDDFKKVVDFLKARVPGVTIATDLICG
FPGETEKDFQETVDLVTLYRFPSLFINQFYPRPGTPAARMEQVAAHVKKQRTKELSQLFH
SYNPYDHKVGERQRVLVTEESFDAQYYVSHNKFYEQVLVPKRAEFKGKMIEVDIYEAGKH
FLKGRPVEDSKPFTASIAKPLQKGEVSGLMQEPAVNGIHEPSSSTPSSSVLLIGSYSLER
EVLKKLAVALTLAAAILAFVIEKVY
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgccgtccgcctgtgactctctgattgacgacattgaggacatggtgtcctccagcgac
cctactcctcacgagcgacaatctgctcgaaagagcatcatcccgaggtccaggaagaaa
aatgagcttctgagccatgaggagctccaagctgacagtttgatccctggcacccaaaag
atctggatgaaaacgtggggctgcagtcacaacaactcagatggagagtacatggccgga
cagctcgctgccagcggatacacgatgactgatgacccgtcagacgcagacctctgggtg
ctcaacagctgcacagtgaagaaccctgctgaggaccacttcagaaactccatcaaaaaa
gcccaggatcagcagaaaaaggtggttctagcaggctgtgtccctcaggctcagccacgc
atggactacctcaaaggactcagcatcatcggggtccaacagattgatcgagtggtggaa
gttgtggacgaggctgttaaaggtcactcggttcgtcttttgggtcagaagaaagatgga
ggccgtaggctcggaggcgctagactggacctgccaaagatcaggaagaatcctcttatt
gaaatcatctccatcaacaccgggtgtctgaatgcatgcacctactgcaagaccaagcat
gccagaggagacctagccagctatcccattgaggatctagtggagagagccagacagtcg
ttccgggagggggtttgtgagatctggttgaccagcgaagacaccggagcgtatggaagg
gacatagggacagacctgcccacgttgctgtggagattggtggaggagattcctgaagga
gccatgctgaggctggggatgaccaacccaccgtacatcctggaacatctggaggagatg
gcgatgatattgaatcatccgcgcgtctatgccttccttcacgttcctgtgcaatcggcc
tcagacagcgtgctgatggacatgaagagagagtactgcgtcgacgacttcaagaaagtg
gtggacttcctcaaagccagggtcccgggtgtaaccattgctacagatttaatctgcggt
tttcctggtgagacggagaaagacttccaagagaccgtagacctggtgaccctttatcga
ttccccagtctcttcatcaaccagttctaccccagacccggaacacctgctgccaggatg
gagcaagtagcagcgcatgtgaagaagcagaggactaaagagctgtcacaactattccac
tcgtacaacccctatgaccacaaggtgggggagaggcagcgcgtgctggtgacggaggaa
tcatttgatgctcaatactatgtgtctcacaacaagttctacgaacaggtgctggtgcca
aagagggcagagttcaaagggaagatgattgaggtggacatctacgaggcgggaaagcac
ttcctgaaaggccgacccgtagaagacagtaagcccttcactgcgtccattgccaaaccg
cttcagaagggagaggtgtccggcttgatgcaggaaccggctgtgaatggaatccacgag
ccttcatcatccacgccctcttcatctgttttgttgatcggctcctacagcctagaaagg
gaagtactgaagaagctggcagttgcgctcactctggcagcagccatcttggccttcgtc
atagagaaagtgtactga
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