Pungitius pungitius (ninespine stickleback): 119197991
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Entry
119197991 CDS
T07626
Symbol
smarcc1a
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
119197991 (smarcc1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppug03021
]
119197991 (smarcc1a)
03036 Chromosome and associated proteins [BR:
ppug03036
]
119197991 (smarcc1a)
Transcription machinery [BR:
ppug03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
119197991 (smarcc1a)
Chromosome and associated proteins [BR:
ppug03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
119197991 (smarcc1a)
PBAF complex
119197991 (smarcc1a)
GBAF(ncBAF) complex
119197991 (smarcc1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
BRCT
BRCT_2
DUF919
Motif
Other DBs
NCBI-GeneID:
119197991
NCBI-ProteinID:
XP_037310652
LinkDB
All DBs
Position
11:18755776..18772531
Genome browser
AA seq
1125 aa
AA seq
DB search
MATAATTAGGTASGGPATGPVGGGTAVGRKKDGGPSTKFWESSETISQFETVRQWIGKHY
KKSVQNDSPSSKSLAGLVVQLLQFQEDAFGRRVNNPALTKLPAKCFLDFKAGGALCHILG
SVYKFKSEQGWRRFDLQNPSRMDRNVEMFLNVEKNLVQNNCLTRPTVFLLPDIEQKQASK
LKDIVKRHQGSITDDKSKATHHIYPTPSQQEEEEWLRPVLRKDKQVLVHWGFSPDSYDTW
VSVSEVEADVEDPPSADRPWKVHAKWVLDTDSFNEWMNEEDYEVDDNKKPVSFRQKIFPK
EEESSRTPDRKERKANSASKKRRRSPSPPSTPAESRKKGGKKGNQGPHWKRRGHRGEEED
TEEDMTKDMDDSSAGASMEEGGVSKNANSKKDSESTPVKGGNVADLDDMEDDSVLSGGKD
DEEQGKAEVNRLMDSSEDNVTEQTHHIIIPSYGAWFDYNCIHEIERRALPEFFNGKNKSK
TPEIYLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCAIMRVHAFLEQWGLVNYQVDSE
SRPLPMGPPPTPHFTVLADTPSGLMPLNHRPPPIPPQQPMPNFADKVKDKSIDLQNFGLR
SDLYNKKNLKGKTVNSTRDWTEQETLLLLEALEMFKDDWNKVSEHIGSRTQDECILHFLR
LPIEDPYMESTEASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVASAAARAALEEFS
RVREEVPAELVEAHVKKVQEAARSTGKVDPAFGLESSGIAGTAPEEPEKTGEQNFGKEAP
EPEKMETDTDSQQADKAELKDEAEKPSESAEKSDKTEAADKVKKEGSETSEREEDNEDGA
EAKAAAADKDKDGERETSSPEQEKEKEEKAATDEGEEKRKKLEHDIGEGNIATAAAAALA
SAATKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALELQRQQL
LTERQAFHMEQLKYAEMKARQQMEQQAAAAAAAAAQAQGQGQGQAPGSGPPPSGMHPGGP
PPHHGGPPPGASMHPGYPPMGHHPMGPHHPGQTGPMGPGQPMPGRMMSGPPSGGPPPGGM
APMMPPRHPGAPNGMYPGPPAAQAEAVPPLPVGPPAPASGRVADN
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggcggcgacaacggcaggcggaacggcctcaggcggaccggccaccggcccg
gtcggcggcggaaccgcagtgggacgaaagaaggacggcggtccttctacgaaattctgg
gagagttcggagaccatatcccagttcgagacggtgcggcagtggatcgggaagcactac
aagaagtctgtccagaatgactccccctccagcaaatccttggcgggtctggtggtccag
ctgctgcagttccaggaagacgcatttggacgcagggtcaacaaccctgctctaacaaag
ctacctgccaagtgtttcctggatttcaaagcaggtggcgctctctgtcacatcttgggg
tcagtctacaagttcaagagcgagcagggatggcgtagatttgacctgcaaaatccttcc
cggatggacaggaatgtggaaatgttcttgaatgtagagaagaacttggtccagaacaac
tgtttgacgcgacctaccgtgttcctgttgccagacattgagcagaaacaagccagtaag
ctcaaagacatcgtcaaaaggcatcagggctccattaccgacgacaaatcaaaagccaca
caccacatttaccccactccatcccaacaagaagaagaagagtggcttcgtcctgtcctg
aggaaagacaagcaggtgctggttcactggggtttctccccagacagctatgatacctgg
gtgtcggtcagtgaggtggaggcagacgtggaggacccacccagcgccgacagaccgtgg
aaggtccatgccaagtgggttctagacactgactccttcaacgagtggatgaatgaagaa
gactatgaggtggatgacaacaagaagccggtcagcttccgccagaagatcttccccaag
gaggaagagtcttcccgtacacccgatcgcaaggagcgcaaggccaactccgctagcaag
aagaggaggcgctccccctcgccgccgagcacccccgccgagtcccgcaagaagggagga
aagaaggggaaccaggggcctcactggaagcgccggggccacagaggcgaggaggaagac
acggaggaggacatgaccaaggacatggacgactcctcagctggtgccagcatggaggag
ggaggtgtgtccaagaacgcaaattcaaagaaagacagtgagagcactccggtaaaagga
ggcaatgtggctgatttggatgacatggaggacgactctgtgttgtctggtggaaaggat
gatgaggagcagggcaaagcggaagtgaaccgactgatggactccagcgaggacaacgtg
actgaacagactcaccacatcatcatcccgagctacggagcctggtttgactacaactgc
atccatgagattgagagaagagcgctgcccgagttcttcaacgggaagaacaagtccaaa
actccggagatatacctggcctaccgcaacttcatgatcgacacatatcggctaaaccct
caggagtacctcacctccacctcgtgccgcaggaacctgactggggatgtctgtgccatc
atgagggttcatgcattcttggagcagtggggtttggtgaactaccaggtggactctgag
agtcgcccgttacccatgggtcccccacccactccccacttcaccgtgctggctgacacg
ccatctggcctcatgcctctgaaccacagacccccaccgattcccccccaacagccaatg
cccaacttcgcagacaaagtcaaagacaagtccatcgacctgcagaacttcggccttcgc
tccgacctctacaacaagaaaaacctcaagggtaagaccgtcaactccacaagggattgg
accgagcaagagactcttctgctgctggaggctctggagatgtttaaagacgactggaac
aaagtgtctgagcacatcggttcacgcacccaggacgagtgcatcttgcacttcctgcgc
cttcccattgaggacccgtacatggaaagcaccgaggcctccctgggccctctggcctac
cagcccatccccttcagccagtctggaaaccccgtcatgagcaccgtggccttcctggcc
tctgtggttgaccccagagtggcgtctgctgccgctcgcgcagctttagaggagttctct
cgtgtgcgtgaggaggtgccggctgagctggtggaggctcacgtgaagaaggtgcaggag
gcggcccggagcaccggcaaggtggaccccgcgttcggcctggagagcagcggcatcgct
ggcaccgcccccgaagaaccagagaagactggtgagcagaactttgggaaagaagcccca
gagccagagaagatggaaactgacacagactcccagcaggcagataaggctgagctgaag
gacgaggccgagaagcccagcgagtccgcagagaagagcgacaagacggaggctgcggat
aaggtgaagaaggaggggtcggagacgtcggagcgcgaggaggacaacgaggatggagcg
gaggcaaaggctgctgcagcagacaaagacaaggatggggagagggagacgtcgtccccg
gagcaggagaaggagaaggaggagaaggcggccacggacgagggtgaagaaaagaggaag
aaactggagcacgacatcggagagggcaacatcgccacggcggccgccgccgctttggca
tcggccgccaccaaggccaagcacttggcagccgtggaggagaggaagatcaagtctctg
gtggctctgctggtggagacccagatgaagaagctggagatcaaactgaggcacttcgag
gagctggagaccatcatggaccgagagaaagaggccttggagctgcagcggcagcagctg
ctcaccgagcgccaggccttccacatggagcagctcaaatacgccgagatgaaggcgagg
cagcagatggagcagcaagccgccgccgctgcagccgcagccgcccaggctcaagggcag
gggcaggggcaggctcctggatccggacctcctccgtcaggcatgcaccccggagggccc
ccgccccaccacggtgggccgcctcccggtgcctccatgcaccccggatacccgccgatg
ggccaccaccccatgggcccccaccacccaggacagacaggaccaatgggaccgggccag
cctatgccgggacgcatgatgtccggcccgccttctggcggcccccctcctggaggcatg
gctcccatgatgcccccccgccatcctggagctcccaacggcatgtatccgggcccaccg
gctgcacaggctgaagcggtacctccacttcctgtgggacctccagcgccggcgagtgga
cgagtggctgacaactaa
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integrated database retrieval system
