KEGG   Pungitius pungitius (ninespine stickleback): 119198092
Entry
119198092         CDS       T07626                                 
Symbol
xrcc1
Name
(RefSeq) DNA repair protein XRCC1
  KO
K10803  DNA-repair protein XRCC1
Organism
ppug  Pungitius pungitius (ninespine stickleback)
Pathway
ppug03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:ppug00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    119198092 (xrcc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ppug03400]
    119198092 (xrcc1)
DNA repair and recombination proteins [BR:ppug03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     119198092 (xrcc1)
SSDB
Motif
Pfam: XRCC1_N BRCT BRCT_2 PTCB-BRCT LIG3_BRCT
Other DBs
NCBI-GeneID: 119198092
NCBI-ProteinID: XP_037310844
LinkDB
Position
11:16306632..16317849
AA seq 611 aa
MPEIRLKHVVSCSTEDTTHKADNLLSSDTYRKWKAARPGEKQISVILQLEKEEQVHSIDI
GNEGSAFIEVLVGNSSAVRDQDYEVLLVTSSFMSPTESRNGTNMNRVRFFGPTQLQKSSA
QEKWDRVKIVCSQPYTKNIAYGLAFVKFHSPPDKNDPPTTASPKLTKLGQFRVKEESPSV
SPSLQPGSLFFSRDSATKSSTPPKVSPQSEKLSYAAAALQAGGSSHSSAQAPSSSSSSSA
SPQPPAKRKFEFGKERQSASGLPPPKKTSPAGSPEVKAATPKHKPSPGAAKASPAPKSAD
KKRESRAKPEPQKASGPQVPFKRIMEGVVFVLSGFQNPFRGELREKALDMGGKYRPDWTP
DATHLICAFANTPKYSQVKSAGGTIVRKEWVMDCHKRRQKLPCKQYLMDGAESSSESEME
VDEQSDEEVNTKMPQRQVTPKKAPEKRSEDDEYAGSTDVEETGAGDDESAVDTEDELQRV
ENKSRQKKAAAGKQDDPYGGSTDENTDAEAEEDHPIPELPDFLSGKHFFLYGKFPNNERR
LLLRYIVAFNGLIEDYMTEKVQFVVTSEGWHDSFEDALMENGNLNFVKPAWIYSINERQK
ILPYQPYSVVP
NT seq 1836 nt   +upstreamnt  +downstreamnt
atgccagaaatccgactcaaacacgtcgtgtcttgcagcactgaggacactacccacaaa
gcggacaacctgctgagctctgacacctacagaaagtggaaagcagcgagacccggggag
aagcagatatcggtcatcctgcagttggagaaggaggagcaggtgcacagcatcgatatt
ggaaatgaagggtcagctttcatcgaggtgctggtggggaattcttcagctgtcagagac
caggactatgaggttctgttggtcacgtcttccttcatgtcccccacggagagccgcaac
ggcaccaacatgaaccgggtgcgtttcttcgggccgacgcagctgcagaagagctccgca
caggaaaagtgggaccgagtgaaaattgtgtgtagccagccgtacaccaagaacatagca
tacggactggcctttgtcaagttccattcaccgcctgacaaaaacgatcctcctacaaca
gcctccccgaaactcaccaagttgggacagttccgggtgaaggaggagtctccctcagtc
agtcccagccttcagccgggcagtctcttcttcagtcgcgacagtgcaacaaagtccagt
actccacccaaagtgtctccacagagcgagaagctgagctacgctgctgccgcgctgcag
gcggggggcagctcccactcctcggcccaagctccctcctccagctcctccagctccgcc
tcgccccagccaccagcgaaaaggaaatttgagtttggcaaagagcggcagtccgcctcc
ggcctcccgcccccgaagaaaacgagtccggccgggtcgcccgaggtcaaagccgcgacc
cccaaacacaagccgagccccggcgccgccaaagcttcgccggcaccgaagtctgccgac
aagaagcgggagagccgagccaaacccgaaccgcagaaagccagcgggccgcaggtcccg
ttcaagaggataatggagggtgtggtgtttgtcctcagcggcttccagaaccccttccgg
ggggagctgagggaaaaggctctggacatggggggtaaatatcgacccgactggaccccc
gacgccacgcacctcatctgtgccttcgctaacacccccaagtacagccaggtgaaatcc
gccgggggcaccatcgtacggaaggaatgggtaatggactgccataagaggagacagaag
ctcccctgcaaacagtatctgatggacggagccgagtcgagctccgagagcgaaatggaa
gtggacgagcagagtgacgaggaagtcaacacaaagatgccgcagagacaggtgaccccc
aagaaggccccggagaagaggagcgaagacgacgagtacgccggctccacggatgtggag
gaaacaggagccggtgatgacgagtcggccgtggacacggaggacgagctgcagagggtg
gagaacaagagcaggcagaagaaagcagcagcggggaagcaggacgacccgtacgggggg
tcgacggatgaaaacaccgacgcggaggctgaggaggatcatcccatccccgagctacca
gacttcctgagcggaaagcacttcttcctctacggcaaattccccaacaacgagcggcgg
ctgctgctgcgatacatcgtcgcctttaacgggctgatcgaggactacatgacggagaag
gtgcagttcgtggtgaccagcgaagggtggcacgactccttcgaagacgcgctgatggag
aacggcaatctgaacttcgttaagccagcatggatttattcaatcaacgaacggcaaaag
attctgccgtatcaaccctactcggtggtgccctga

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