Pungitius pungitius (ninespine stickleback): 119198244
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Entry
119198244 CDS
T07626
Symbol
u2af2a
Name
(RefSeq) U2 small nuclear RNA auxiliary factor 2a isoform X1
KO
K12837
splicing factor U2AF 65 kDa subunit
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119198244 (u2af2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ppug03041
]
119198244 (u2af2a)
Spliceosome [BR:
ppug03041
]
Complex A
U2 snRNP components
U2 related factors
119198244 (u2af2a)
Complex B
119198244 (u2af2a)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_7
Motif
Other DBs
NCBI-GeneID:
119198244
NCBI-ProteinID:
XP_037311100
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All DBs
Position
11:14166565..14173883
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AA seq
503 aa
AA seq
DB search
MSDFDEFERQLSENKQGRAGLNHAERDKENRHHRRSSSRSRSRERKRKSRDRDRRSRDRR
GDSKDRRHRRSISDPAGNLKAPRLAPVELTSPPSFPPDNAGSRSPHREKKKNKVKKYWDV
PPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVG
NIPFGITEESMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAF
DGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGTQPINGVVSTVVPDSAHKLFIGGLPN
YLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDVNLNDQAIAGLNGMQLGDK
KLLVQRASVGSKNATLTSINQTPVTLQVPGLNSSVTQMGGLPTEVLCLMNMVAPEELLDD
EEYEEIVEDVRDECSKYGAVKSIEIPRPVDGLEVPGTGKIFVEFMSVFDSQKAMQGLTGR
KFANRVVVTKYCDPDAYHRRDFW
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacttcgacgaattcgaaagacagctctctgaaaacaaacaaggcagggccggg
ctaaatcatgctgagagggacaaggagaaccgccaccaccgccggtcctcctcccgcagc
cgcagcagagagaggaaaaggaagagcagagacagggacagacgcagcagggaccgccgc
ggggacagtaaggaccgcagacacaggcgcagcatttcagatccagccggaaatcttaaa
gcgcccaggctggcgccagtagaactgacctcaccacccagcttccccccggacaatgct
ggaagccgctctccacaccgtgagaagaagaagaacaaagtgaagaagtactgggatgtc
ccaccacctggttttgaacacatcactcccatgcagtacaaagccatgcaagctgcaggc
cagatcccagccactgccctcctgccgacaatgactccagatggcctggctgttactccc
accccagtacctgtagtgggcagccagatgacccggcaggcccgcaggctctacgtgggc
aacataccctttggtatcactgaagagtccatgatggacttcttcaatgcccagatgcgt
ctgggtggtctcactcaggcccctggaaaccctgtgcttgcagtacagatcaaccaggat
aagaattttgccttccttgagttccgttcagtggacgaaaccacacaggcaatggccttt
gatggtataatctttcaaggccagagtctgaagattcgtcgtccccacgattaccagccg
ctgcccggcatgagcgagaaccccagtgtctatgtgcctggtacacagccaattaatggt
gtagtgtctacagtggtgcccgactctgctcacaagctcttcatcggcggcttgcccaac
tacctgaatgatgaccaggtgaaggagctcttgacgtcatttgggcctctgaaggccttc
aacctggtcaaggacagtgctactggcttatctaagggatatgccttttgtgaatatgtc
gacgtgaaccttaatgaccaggctatagctgggctgaatggcatgcagctgggtgacaag
aagctcctggtgcaaagagcaagtgtgggatccaagaacgccaccctgacgagtataaat
cagaccccggtgacgctgcaggtgcccggtctgaatagctcggtgactcaaatgggtggc
ttgcccactgaggtgctgtgtctgatgaacatggtggcgccagaggagctgctggacgat
gaggagtatgaggaaattgttgaggatgtcagggacgagtgcagcaagtacggcgcagtg
aagagcatcgagatacctcgacccgtggacggcctggaggtgcctgggaccggcaagatc
tttgtggagttcatgtcagtttttgactcccagaaggccatgcaggggctgacaggaagg
aagtttgccaacagggtggtggtgaccaaatactgcgatccggatgcttatcaccgtcgg
gacttctggtag
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