Pungitius pungitius (ninespine stickleback): 119198273
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Entry
119198273 CDS
T07626
Symbol
trim55b
Name
(RefSeq) tripartite motif-containing protein 55b isoform X2
KO
K10654
tripartite motif-containing protein 55
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
119198273 (trim55b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ppug04121
]
119198273 (trim55b)
Ubiquitin system [BR:
ppug04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
119198273 (trim55b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_2
RING_XB3-XBAT31
zf-RING_5
zf-RING_2
zf-B_box
zf-C3HC4_4
zf-C3HC4_3
zf-RING_6
Sina_RING
Zn_ribbon_FGT1_2
Prok-RING_4
zf-RING_10
Rrn6_HB
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
119198273
NCBI-ProteinID:
XP_037311133
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All DBs
Position
19:6318535..6322482
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AA seq
374 aa
AA seq
DB search
MNTMDNLEKQLICPICLEMFTKPVVILPCQHNLCRKCANDVFQASNPYLPTRGGSLTSGG
RFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDMFKQESSSSSSKPAPERKEETPMCDVHE
EEKINIYCVTHGVPTCSMCKVFGAHKDCEVAAITSIYQSKKAELSDGIAMMVGNNDRMQG
IVSQLEEACRAIEENGRRQKTLVCERFDQLYSILEEKKVEMSQKVTAEQEEKVNYIRGLT
RKYGDHLEESCKMVELGIQTMEEPEMALFLQNTKPLLKKLAEASSTAHLDKVERGYENMD
HYTVDFKKEGLALRSLDFLQDDEDEDEEDEDGEASAEEGEGPPAAPAGGGGAPAPVQPAA
PPQPSPSSPSAASS
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atgaacaccatggataacctggagaaacagctgatttgtcccatatgcctggaaatgttt
acaaagcctgtggtcatcctgccctgccagcacaacctctgcaggaaatgtgccaacgac
gttttccaggcctcaaacccataccttccaacgagaggtggctcgctgacgtccggcggc
cgcttccgatgcccgtcctgcagacacgaggtggttctggaccggcacggtgtctacggg
ctgcagagaaacctgctggtggagaacatcattgacatgttcaagcaggagtccagcagc
agcagcagcaagccggcgcccgagagaaaggaagaaacgcccatgtgtgacgtccatgaa
gaagaaaagatcaacatttactgtgtgacccatggcgtgcccacgtgctccatgtgtaag
gtctttggagctcacaaagactgcgaggtggcggccatcaccagcatctaccagtcaaag
aaggcggagctgagtgacgggattgccatgatggtgggtaacaacgacagaatgcaaggc
atcgtcagtcagctagaggaggcctgtcgcgccatagaggagaatggtcggaggcagaag
acgctggtgtgtgagaggtttgaccagctttactccatcctggaggaaaagaaggtcgag
atgagtcagaaggtgaccgccgagcaggaagagaaggtgaattatatccgaggcctgacc
aggaagtacggagaccatctggaggagagctgtaagatggtggagttggggattcaaact
atggaggagccggaaatggctttatttctacagaacacaaagcctctcctcaaaaagctt
gcagaagcatccagcacagcgcacttggacaaagttgagcgcggctacgagaacatggat
cattacacggtcgacttcaagaaggagggcctggccctgcgcagcctggacttcctccaa
gatgacgaagacgaggacgaagaggacgaggacggagaagccagcgcggaggaaggcgag
gggcccccggctgctcctgcgggcggcggcggcgcccctgcccccgtccaaccggccgcc
cccccgcagccaagtccttcctccccgagcgccgcctcgtcctag
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