Pungitius pungitius (ninespine stickleback): 119198277
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Entry
119198277 CDS
T07626
Symbol
trpa1b
Name
(RefSeq) transient receptor potential cation channel subfamily A member 1b
KO
K04984
transient receptor potential cation channel subfamily A member 1
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ppug04040
]
119198277 (trpa1b)
Ion channels [BR:
ppug04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
119198277 (trpa1b)
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GFIT
Motif
Pfam:
Ank_2
Ank
Ank_4
Ank_3
Ank_5
Ion_trans
Ank_KRIT1
MecA
Motif
Other DBs
NCBI-GeneID:
119198277
NCBI-ProteinID:
XP_037311137
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Position
19:complement(6869645..6882899)
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AA seq
1130 aa
AA seq
DB search
MNFSKEAARQTSCYTYVIEEEDSALARLNVFELAEKGDLALLENLVRKCPEVLIEKDEYG
AGPLHHAAAGDHVNLIQFITTVREPQGRHASPIDHKLLSTKDLNSCDEQGNVPLHWAVEK
NMAGSCRALLDLGADPNILNTALLSPLHLAVCLGHNDLVELLVSYLATDCNLQGDLGNTP
LILACSLNNFEALNILIKNGRAHLCRQNRLGHFPVHAAAFAGAKNAIEMILKAGEKHGHQ
VDAHINYLDKSSCSPLHLAVRGGNIEVIRFCIANGAKIDQQQNDKSTPLHLACTQGATEV
VKLMLSSFQQVEDVINLTDGACQTPLHRATIFDHTELAEYLISLGAKVNSTDCKGNSPLL
LATSCGAWRTVALLLSRGADVNVKDRCGCNFLHLALLQPKGLKNLSQEVLQLGSVTALLS
CEDSEGCTPLHYACRLGIHDSVKNMLGLSGQDGLACKSKDKKSALHFAAQYGRINTCQRL
LETITDSRLLNEGDERGLTPLHLASREGHTKVVQLLLRKGALFHGDYKGWTCLHHAASVG
YTHTMDILLSANLKLLDKVDEDGNTALHIAAREGHVAAVNLLLSRGAELTLNKNSTSFLH
EALQNGRKDVVNALIDSDRCTEALELFNPDSSQRSPILEMIELLPETYKHLLDCCVKESD
DDRNSPDYHIEYSFKWLQAPLALRKLTNMRNIQPLAALNAMVEYNRIELLNHPVCKKYLA
MKWSAYGSTAHFLNMFMYLLGLLPLTNLIVNLRPSLNTTDHRITMVEVSFFQQHVFLSFC
MVMVLVMNVNAIVKELVQISQQRWNYFKDYSNQSDWLSAVFALLFIIPTILNVEGSLHWQ
AGAMAVLTSWTGFLLYLQRFEGVGIYVVMFWEIMKTLVRIVMLFIYLVLAFSLAFYALML
EQKEFDSIPLSVMQTFVMMVGELNYQSNILDPYLQNELPFGVLTYFIFVMFVLLMPILLV
NLMIGLAVGDIAEVQRNAALKRIGMQIELHTALEDKLPYWFMKRVDKRSLIIYPNRRCSK
NFIRQFIIGEDDTNDVWNRLQAQPQRCTLVEDELRKQKFRMKEMSCTMEKQHNLLKLIIQ
KMEISSEADEYDGPAHVRGNMGPNLSQAKPRGHGASRWVPLIKAIESKKT
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgaacttcagcaaggaggcggcccggcagaccagttgttatacatatgtgatagaagaa
gaggattcagcgctggcgagactaaatgtattcgagctggcggagaagggtgacctggct
ctcctagagaacctggtcaggaagtgcccagaggtcctgattgagaaagatgaatacggg
gctggtccccttcatcatgccgccgcaggggaccacgtcaacctcatccaattcatcacc
accgtcagagagccacagggtaggcacgcctcccccatcgatcataagttgctctccacc
aaagacctgaacagctgtgatgagcagggcaacgtgccgctacactgggcagtggagaaa
aacatggcggggagctgccgggcccttctggacctcggggccgaccccaacatcctcaac
acggccctgctctcccccctgcacctggctgtctgcctcggacacaacgacctggtggag
ctgctggtgtcctaccttgccacggattgcaatcttcagggagaccttggcaacacccca
ttgatactggcctgctccctcaacaactttgaggctctcaacatattgataaagaacggc
agagcgcatctctgccggcagaacaggctcggccatttccccgtgcacgcggctgccttc
gcaggcgcaaagaatgccatcgaaatgatcctgaaggccggagagaagcatggccaccaa
gtcgacgctcacatcaactatttagacaagtccagctgcagtcccctccacctggctgtc
cgcggcgggaacatcgaggtcatccgcttctgcatcgcaaacggggccaaaatcgaccag
cagcagaatgacaaatcgacgccgcttcatttggcctgcacccagggggccactgaggta
gtcaaactgatgttgtcctcctttcaacaagtggaagatgtcatcaacctaactgatggg
gcgtgtcagacccctctccacagggctacaatatttgaccacacagagctggcggagtac
ctcatttctttgggtgcaaaagttaacagcactgattgtaaagggaactctcccttgctg
ctggctacgagctgcggagcatggagaactgtggccctgcttctctcgagaggggccgat
gtcaacgtgaaagacagatgtggttgtaacttccttcacctggcccttctccagcccaag
ggtctgaaaaacctctcacaagaagtcctacagctgggcagtgtgacggcgctgctcagc
tgtgaggatagcgagggctgtacccctctccactacgcctgcagactgggtatccacgac
tcagtgaagaacatgctgggcctctcggggcaggacggcctcgcgtgcaagtcgaaggac
aagaagtccgcgctgcactttgctgctcagtacgggcgcatcaatacatgtcagcgattg
ctggaaaccatcacggactctcgtctgctaaatgaaggtgacgagcgaggcctcacgccc
cttcatttggcttcaagagagggccacaccaaggtggtacagctgctgctgcgcaaaggg
gctctcttccacggtgattacaagggctggacttgtctgcaccacgctgcatctgtggga
tacacacacactatggacatcctcctgtccgccaatctcaagttactggataaagtagac
gaggacgggaacactgcactccacatcgcagcaagagagggacatgtggccgcagtcaat
ctcctgctgtctcgcggagcagagctcaccttaaacaagaacagcacttcgttcctccac
gaagctctgcaaaatgggagaaaagatgtggtcaatgcattgattgacagtgacagatgt
accgaagcattggaactgtttaatccagactcttcccagcgaagtcccatcctagaaatg
attgaattacttcctgagacgtacaagcacctgttggactgctgtgttaaggaatcggat
gatgatcgcaacagtcctgactatcatattgaatacagtttcaaatggctccaagctccc
cttgcactaaggaagttaactaacatgaggaacattcagccactagctgcactcaacgcg
atggtcgagtacaaccgcattgaactcctcaaccaccccgtctgcaaaaagtacctggca
atgaagtggtctgcatatgggagcacggcccattttctcaacatgttcatgtacctgtta
ggcctgctgcccctcactaacttgatcgtgaacctgaggccctctctgaacaccactgat
catcgtatcaccatggtggaagtatctttctttcagcaacacgtcttcttgtccttctgt
atggtgatggtcttggtcatgaacgtgaacgccatagtgaaggaattggtgcagatttca
caacagcgctggaattacttcaaggactattccaaccagagtgactggctttctgcagtc
tttgctcttttgttcataatccccaccatcctaaatgtggagggttctttgcactggcaa
gcaggagccatggcggttttaacctcctggactggatttcttctctaccttcagaggttt
gagggagttggaatttatgttgtgatgttttgggagatcatgaagaccctggtccgtatc
gtgatgctcttcatttacctcgtgttggcgtttagtttggcgttctatgctctcatgcta
gaacagaaagagtttgacagcataccgctgtctgtgatgcaaacctttgtgatgatggtc
ggggagctgaactaccagagcaacatcctggacccttatctgcagaacgaacttcccttc
ggcgtcctgacttacttcatttttgtgatgtttgtgctgctcatgccgatcctgctggtg
aacctgatgatcggtctggctgttggagacattgctgaagtacaaagaaacgcagcctta
aaacgaatcggaatgcaaatcgagctgcacaccgctctggaggacaagctgccttattgg
ttcatgaaacgtgtcgataaacgcagccttattatctaccctaatcgccgctgctccaag
aacttcattaggcagttcatcataggtgaagacgatacaaatgacgtctggaatcgactg
caggcccaaccacagagatgcactctagtagaggatgagctcagaaagcagaaattcagg
atgaaggagatgtcatgcacgatggagaagcagcacaacctcctgaagctcatcatccag
aagatggagatcagctcggaggcagacgagtacgatggcccagctcacgtcaggggcaac
atggggccgaacttgagtcaggcgaagccgaggggtcatggcgcctctcggtgggtcccg
ctgataaaggccatcgagtccaaaaaaacctga
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