Pungitius pungitius (ninespine stickleback): 119198397
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Entry
119198397 CDS
T07626
Symbol
spata13
Name
(RefSeq) spermatogenesis-associated protein 13 isoform X1
KO
K05769
Rho guanine nucleotide exchange factor 4/29
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
119198397 (spata13)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ppug04131
]
119198397 (spata13)
Membrane trafficking [BR:
ppug04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
119198397 (spata13)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RhoGEF
SOS1_NGEF_PH
SH3_1
SH3_9
PH
SH3_2
Med13_C
Motif
Other DBs
NCBI-GeneID:
119198397
NCBI-ProteinID:
XP_037311408
LinkDB
All DBs
Position
19:complement(6126257..6139408)
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AA seq
1238 aa
AA seq
DB search
MSRAELLDRVSSTSEESLPGLHNSKADPRTHSRPLSDIYPFHSPADRGVVPCQLSVCAAQ
VQPVTAGPYENQLNGINSSSWSNPVIGQPEGKPFSSRIMRLFSNPRKGPVPARGPTADSP
APSHGNDSNGVPQSWSGLPGLGVVDSFKKLRSSVLQGIQSRGAVSQDGEHDPSDQEMANG
TAAADMYPSPDDAGSRLMCADGYGVPNGQYNGQKSAATTRCASDDEEENDEGDELARNTR
FSRSIRRAYGAGRISLLDTGNRTTTTGTNRTPGVQTDNATEDANASVLSKLSRSAENLHI
FKAPFRRKAPPPGPPPLQEDAQRTTASNGTPNIQRTASVSSVDLRGHAAGGAKGPAMTKK
PMLKLVGSMTDLTARRRRSPSPSSTSPSPLSPLTRLHDDYSRRTPCLATGERQRRPSPVR
ARVMSAESTLLVHLRPEYADGPGQRRGLTGLVPVEPPEGAEPTTADFFAPYESSAYKPPP
VQKEAEDDPRPNEATSDQPEPEALLQTEEVPPTPITTPPTSSTSLSESPTGASLETSSAR
PRRRSGRARPRPISDYGQLVSRRNPIPEEGAETRAEERTAETSSHKDSSGRDSCGIEESP
ETCSVSGDDQGGTRQRPVSVIGGVEESEEKEDRLPSLLSRPPIPSHQVPPYRAVSARFRP
SALSQSTPIGLDRVGRRKLHRMLSDGLSECSAALDDSVSEEEDGSFDELADATPHLRPGV
ELSVLNEWISSGNAVYAEALWDHVTMEEQELAFKAGDVIRVLEAPDKDWWWGRGADKESW
FPSSFVRVRVNQEDLSAESVESVADQEDPAPRDAHNAQHKEQMRTNVVQEIMNTERIYIK
LLKDICEGYIRQCRKHPDMFTELQLKTIFSNIEDIYRFQRQFLRDLEKKYDKDQPHQSEI
GSCFLLQGEGFSIYSDYCNTHPAACSELQRLMKSGKYKHFFEACRLLQQMIDISVASFLL
TPVQKICKYPLQLGELLKYTPKDHRDYSGVSKAHEAMKNVASLINERKRRHESIDTIAHW
QVAILHWEGPDVLELSSDLIHSGELTRVLRQGKMQQRSFFLFDHQLVFCKKDVLRRDLLH
YRGRLDMDQTEVVDVPDGRDPDLGLQLRNALRLRNASTLEFVCGLCCRKAQDKQRWLQAF
AKERQRVREDQEMGMEISEEQRKQAIVNARRAKQKKSKNIGYSGSVPPHHQNLHPLHPLH
QRHITIPTSVPQQQVFSLAEPPKRKPYHVLQSIPFFRK
NT seq
3717 nt
NT seq
+upstream
nt +downstream
nt
atgagcagggcagaactactggacagggtctcgtccaccagcgaagagtctctcccgggc
ctccacaactctaaagctgacccgcggacccacagccgacccctcagtgacatttacccg
tttcacagtcccgccgacagaggtgtggtcccgtgccagctgtccgtgtgcgccgcccaa
gtgcagccggtgactgcgggcccttacgagaaccagttgaatggcatcaactcgtcgtcc
tggtccaaccccgtcataggtcaacccgagggcaagcctttttcctcaagaattatgagg
cttttttccaacccgaggaagggccctgtccccgctcgcggtccgaccgctgacagtccc
gccccgtcccacggcaacgacagcaacggcgtcccccagtcctggtcgggactaccgggt
ctgggtgtggtggactccttcaaaaagctgcgctcctcggtgctccagggtattcagagc
agaggggcggtcagccaagatggagagcacgacccgtctgaccaggaaatggcgaatgga
acagctgcggcagacatgtaccccagtccagatgacgcaggaagccgcttaatgtgtgca
gacggatacggtgtgcccaacggacaatataacgggcaaaagtcggccgcgacaacccga
tgtgcatccgacgatgaggaggaaaacgacgaaggagacgagctggcgcgcaacacgcgg
ttctcgaggagcatcaggagggcgtacggagccggtcgcatctctttattggacaccggg
aacaggacgacgactacgggaaccaatcggacgcccggcgtccaaacggacaacgcgacg
gaggacgctaatgcgagcgtgctgagcaagctgagcagaagtgcagagaatcttcacata
tttaaggcgcctttcaggcgcaaagccccgccgccgggaccgcctccgcttcaggaggac
gcccagaggaccaccgcgtcgaacgggacaccgaacatccagaggacggccagcgtctcc
tcagtggatctccggggccacgctgccggcggcgcgaagggccccgcgatgaccaagaag
ccgatgctgaagctggtcggcagcatgaccgacctgaccgccagacgcaggcggagtccc
tcccccagctccacctctccgtcaccgctgtctcccctgacccgtctccacgacgactac
tcccgccgcacgccttgcctggcgacgggtgagcgccagcgccgtccctcgcccgtcaga
gcccgggtcatgtccgcagaaagcacccttctggttcatctgcgccccgaatacgccgac
ggccccgggcagcgcaggggcctcaccggcctggttcccgtggagccgccggagggagcc
gagccgactaccgctgacttctttgctccttatgaatcgtctgcttacaaacctcctccc
gtccagaaagaagctgaggatgacccgcgaccaaatgaggcgacatcggaccaaccagag
ccagaagcccttctccaaacagaggaagtccctccaacccccatcaccacccctcccacc
tcctccacgagcctctcagagtcgcccacgggcgcatccttggaaacgtcctccgccagg
ccgaggcggaggagcggacgcgcgagacctcgtcccatctctgactacgggcagctcgtt
tccaggaggaaccccatccccgaggaaggggcagaaacgcgcgccgaggaaaggacagcg
gagacatcctcgcacaaggacagcagtggtagggactcgtgcgggattgaagagagcccg
gagacatgcagcgtcagcggggacgatcaaggaggcacgaggcagcgcccggtctcggtg
atcgggggcgtcgaggagagcgaggagaaagaagaccgcctcccttctcttttgtcgcgg
ccgcccatcccctcccaccaggtccccccctacagagccgtgtctgccaggtttcgaccc
tccgccctctcccagagcacccccatcggactggaccgcgtagggcggcgtaagctccac
agaatgctcagcgatggtttgtcagagtgctcggcggcgctggatgacagcgtgagtgaa
gaggaggacggcagcttcgacgagctcgccgatgcaacgccccacctccggccaggggtg
gagctgtctgtgctcaacgagtggataagctcaggcaacgccgtgtatgctgaggctctg
tgggaccatgtgaccatggaggagcaggagctggccttcaaggccggagacgttatccgc
gtactggaggccccggacaaggactggtggtggggcaggggggctgacaaggagtcctgg
ttcccctccagctttgtgagggtgcgagtgaaccaggaggacttgagtgcagaaagtgtg
gagagtgtcgcggaccaggaagatccggctcccagggacgcacacaacgctcagcacaag
gagcagatgagaaccaacgtggttcaggaaatcatgaataccgaacgcatctacatcaag
ctcctgaaagacatctgtgagggttacatccgtcagtgccgtaaacacccggacatgttc
actgagctgcagctgaagaccatcttcagcaacatagaggacatctacaggttccagagg
cagtttctcagagacctggagaagaagtacgacaaagaccaacctcatcaaagtgaaatt
ggctcttgctttctcctacagggagagggcttttctatctactccgactattgtaacact
catccagcagcctgctctgagctgcagcgcctcatgaagtccggaaaatataagcatttc
ttcgaggcctgccggctcctccagcagatgatcgacatttccgtggccagtttcttgcta
acgccggttcagaagatctgtaaataccccctgcagcttggagagctgcttaagtacacc
cccaaagaccacagagactacagcggggtgagcaaagctcacgaggcgatgaagaacgtg
gccagtttgataaacgagaggaagcggcggcatgagagcatcgacaccattgctcactgg
caggtggccattctacactgggaggggcccgacgtgctggagctcagctcggacctgatc
cactccggcgagctgactcgggtcctccgacaaggcaaaatgcaacagcgcagcttcttc
ctgttcgaccaccagttggtcttctgcaaaaaagacgtgctgcgcagagacctgctccac
taccgcgggcggctggacatggaccagacggaggtggtggacgtgcccgacgggcgggac
ccggacctgggcctgcagctgaggaatgcgctgcgcctgcgcaacgcctccactctggag
tttgtgtgcgggctgtgctgcaggaaggcccaggacaagcagaggtggctgcaggccttc
gccaaggagaggcagcgagtcagagaagaccaagagatgggaatggaaatcagtgaagag
caaagaaaacaggccattgttaatgccaggagagccaaacagaagaaaagcaaaaacatt
ggttactctggttctgtcccaccgcaccaccaaaaccttcacccacttcacccacttcac
cagcgtcacatcaccatcccaaccagcgtgccccagcagcaggtcttttcactggccgag
cccccgaagcggaagccttaccacgtgttgcaaagcatcccctttttcaggaagtga
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