Pungitius pungitius (ninespine stickleback): 119198688
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Entry
119198688 CDS
T07626
Symbol
trpc1
Name
(RefSeq) short transient receptor potential channel 1
KO
K04964
transient receptor potential cation channel subfamily C member 1
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ppug04040
]
119198688 (trpc1)
Ion channels [BR:
ppug04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
119198688 (trpc1)
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GFIT
Motif
Pfam:
TRP_2
Ion_trans
Ank_2
Ank_4
MTR4-like_stalk
LHD_TRPY1
TALPID3
Motif
Other DBs
NCBI-GeneID:
119198688
NCBI-ProteinID:
XP_037312019
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Position
19:complement(4823798..4834652)
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AA seq
796 aa
AA seq
DB search
MHISVWPYSLSVVMAALYQGTDASSPDTFLALKDVREVKEETTLDEKLFLLACEKGDYYM
VKKLLEENRHGELNLNCVDVLGRDAVTITIENENLDILQLLLEHGCQATDALLVAIDSEV
VGAVDILLNHRPRRSSKPSIAKLMQRIQNPEYSTTMDVAPVILAAHRNNYEILTMLLKQD
ISLPRPHAVGCECTLCNAKNKKDSLRHSRFRLDIYRCLASPSLIMLTEEDPILRAFELSA
DLKELSLVEVEFRNDYDDLAKQCKMFAKDLLAQARNSRELEVILNHTSNEDQVDKRGLLE
ERMNLSRLKLAIKYNQKEFVAQSNCQQFLNTVWFGETASYRRKHTCLKMATVLSVAMLWP
LLSVCYLLVPRSRVGQIIHTPFVKFIIHSASYFTFLLLLNLYSLVYNDGKKNTMGPALEM
IDYLLILWIIGMVWSDVKRLWYQGLEDFLDESRNQLSFVMNSLYLATFALKIVAHSKFKN
VEETERKNWDAFHPILVAEGLFAFANVLSYLRLFFMYTTSSILGPLQISMGQMLQEFGKF
LGLFLLVLFSFTIGLTQLYGKDQQDPDKNPPKDCEGIFCQRQSNDAFHTFMGTCYALFWY
IFSLAHVALFVTRISYTEELRSFVGAMIIGTYNIVVVIVLTKLLVAMLHKSFRQIANHED
KEWKFARAKLWLSYFDDKCTMPPPFNILPSPKTVCYLVTSMSKWICSHTSKGKVKRQNSL
REWKNLKQKHDENYQKIMCCLVHRYLTSTRQKMQSTDQATVENLNDLRQDLSKFRNEMRD
LLGFRTSKYAMFYPRS
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atgcacatcagtgtttggccgtactcgctctccgtcgtaatggcagctctgtaccagggc
acggacgcttcctctccggatacatttctggccttgaaagacgtgcgagaggtgaaagag
gaaactacgctggacgagaagctcttcttgctggcgtgcgagaaaggcgactactacatg
gtgaagaaactgcttgaggagaaccgccacggcgagctcaacctcaactgcgtggacgtg
ctgggccgggacgccgtcaccatcaccatcgagaacgagaacctggacatcctgcagctg
ctcctggaacatggctgccaggcgacggacgccttgttggtggccatagactctgaggtg
gtgggagctgtggacatcctcctcaaccacaggccgaggagatcctccaagccctccatt
gcaaaactgatgcagcgtattcagaacccagagtattccaccaccatggacgtggctccg
gtcatccttgcagcccacaggaacaactacgagatcctgaccatgctgctgaaacaggac
atctcgctcccccggccccacgccgtaggctgcgagtgcacgctttgcaacgccaaaaac
aagaaggacagcttacggcactccaggttccgcctggacatctaccgctgcctggccagc
ccctctctgatcatgctgactgaagaagaccccattcttagggcctttgaactgagtgca
gacctcaaggagctcagtctggtggaggtggagttcaggaatgattatgatgatctggcg
aagcagtgtaagatgttcgccaaggacctgctggctcaggctcgaaactctcgagagctc
gaagtgattctcaaccacacatccaatgaggatcaagttgacaagaggggtctccttgag
gagcggatgaacctcagccgactcaagctcgccatcaagtataaccaaaaagagttcgtg
gctcagtccaactgtcagcagttcctcaacaccgtctggttcggggagacggccagttac
cggcgcaagcacacctgtctgaagatggccacggtgctgagcgtggccatgctttggccg
ctgctctccgtctgctaccttttggtgccgcgctcccgcgtgggccagatcatccacacg
cccttcgtcaagttcatcatccacagcgcctcctacttcaccttcctgctgctgctgaac
ctgtactctctggtctacaacgacggcaagaagaacaccatgggccctgcgctggagatg
atcgattacctgctcatcctttggatcataggcatggtgtggtccgatgtgaagcgcctg
tggtaccaggggctggaagactttctggatgagtcgaggaaccagctgagcttcgtcatg
aattccctttacctggccacctttgccctcaagatagttgctcacagcaagttcaagaat
gtggaggaaacggagaggaagaactgggacgccttccaccccatcttggtggccgagggc
ctgtttgccttcgccaacgttctgagttacctacgactcttcttcatgtacaccaccagc
tccatactgggaccactacagatctccatgggtcagatgctgcaggagtttgggaagttt
ttgggcctcttcctgttggtgttgttctccttcaccattggactcacccagctgtacgga
aaggaccagcaggacccggacaagaatccaccgaaggactgcgagggcatcttctgccag
cggcagagcaacgatgccttccacacgttcatgggcacctgctacgccctgttctggtac
atcttctccctggcacacgtggctctcttcgtcacccgtatcagctacacggaggagctg
cgctcttttgtgggcgccatgatcataggcacctacaacattgtggtggtgatcgtgctg
accaagctgctggtggccatgctccataaaagcttcagacaaattgctaatcacgaggac
aaggagtggaagttcgctcgggccaaactgtggctcagctactttgatgacaagtgtacc
atgcctccgccattcaacatcctcccctccccgaagactgtctgctacctggtgaccagc
atgagcaagtggatctgttctcacacctcaaagggcaaagtgaagcgacagaacagcctc
agggagtggaagaacctgaagcagaagcatgacgagaactatcaaaagatcatgtgttgc
ctggttcaccgctacttgacctccacgcggcagaagatgcagagcacggaccaggccacc
gtggagaatctcaacgacctgcgccaagacctctcaaagtttcgcaatgaaatgagggac
ctgctgggtttccggacctccaaatatgccatgttctacccaaggagctaa
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