Pungitius pungitius (ninespine stickleback): 119203492
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Entry
119203492 CDS
T07626
Name
(RefSeq) collagen alpha-5(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug04510
Focal adhesion
ppug04512
ECM-receptor interaction
ppug04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119203492
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
119203492
09142 Cell motility
04820 Cytoskeleton in muscle cells
119203492
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ppug04147
]
119203492
00536 Glycosaminoglycan binding proteins [BR:
ppug00536
]
119203492
Exosome [BR:
ppug04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
119203492
Glycosaminoglycan binding proteins [BR:
ppug00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119203492
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
119203492
NCBI-ProteinID:
XP_062413844
LinkDB
All DBs
Position
15:11565665..11586204
Genome browser
AA seq
1606 aa
AA seq
DB search
MGRPMLAVLLILFAVMLMDIGANNCVCNGKSRCHCAGVKGSRGEKGFKGVQGLPGTEGRR
GSDGQPGPLGPKGSTGPDGPDGAKGDKGYEGKEGLAGSHGLPGIPGLQGPPGTTGSTGCN
GTEGEEGPPGVPGVHGHDGSAGPPGLPGPKGESWVSTNVIMAPNGPPGRDGQRGFPGLVG
EHGLPGDPGRRGSVGFPGPSGSPGSKGQEGIGGTPGPQGLKGRQGPQGPPGPPGQIKEFL
TKSLLSKGEKGSNGDIGIKGCHGEQGDPGNGYYVKGAKGDRGAQGPEVRYLLIFITEVLT
FRPLFLIGDTYEIQWCPKTGQSGIPGPSGPNGFPGPKGDPGEPGDIHPGLPGQDGDHGDQ
GPPGDQGPPGPPEDRTNRISKGNPGMKGTRGTPGPTGYDGLHGMKGSKGEPCYECGLGFP
GPPGPQGPQGTPGHNQGPGAKGDPGYPGSIGLPGKPGPFGPMGYPGPPGEKGNSYTFQIG
EKGEEGEPGLPGRPGADALPGFPGLPGRRGDQGPPGDSYPFPGEDGDRGFPGPPGPSGRQ
GPVGYPGPVGYGLAGPLGSTGDVGVPGLPGHPGIPGQKGEPSYIQTKGYPGPPGFKGLPG
LLGSRGNPGAPGIPGIPGFQGQKGVSFPGKPGIPGQKGDKGQRGLPGPTVVGLPGRPGSK
GIPGPAGVKGDSGPGYPGPRGSPGPAGEDGAQGPVGDPGNPGLPGSPGVHGNPGLSGEKG
SKGSVGPPGLPGNKASCNQDLPGPRGPEGPDGYPGHPGPNGLPGEKGNSGLPGFGRPGVP
GDPGVLGQSVPGSPGLPGQKGIKGKNGLPGPSGLRGEPGPDGLPGYGPDGLPGIAGPPGQ
IGAPGPDGALGSVGPPGVNGDPGMTGPPGTPSLDKDEFGQPGEPGDPGSPGLSGANGNTG
SIGPKGQRGLAGAPGSPGQRGRPGDPGVDHQVVSEGSRGPAGAPGDSGVRGPPGPKGIKG
DQGQSGESGPRGAPGPTGNKGINGEPNYNGCGLPGPVGQKGEPGMCNSCALKGQKGDLGS
FGPPGLPGHHGAKGNPGPDGQNGPAGYEGPKGSDGPPGNKGQPGPNGPAGDPGQPGVGGY
PGSKGNQGWDGIPGPPGQKGETNIIGGTPGRRGDTGQQGESQFTSVYFYTVGVPGNPGPP
GLSVTGSYGPIGDQGFPGQKGARGPKGPRGREWACAPGSKGDHGHTGNPGVPGYRGLPGL
PGPTRPGLKGDRGDPGLIGAQGHSGPQGDPGPQGPLGTRGRPGGPGPIGDFGSSGGHGLP
GVKGDPGYIPGPPGQPGVKGFPGRPGLKGVKGINEPGPPGAPGPFGNRGSPGITGPSGSP
GQPGQPGVRGKQGSSPDGHPGFTGLKGDKGRAGPPGPEGRLGDPGHKGNQGLPGSGGAGY
VDSFLIATHSQSTNVPDCPRGTSLIFSGYSFLFINGNERAHGQDLGTMGSCLPRFSTMPF
LFCDTESNCRYASRNDYSYWLSTDTPMPTNMASITGDTLASYISRCSVCETTSNVIAVHS
QTTLTPECPRYWESLWTGYSFVMQTGAGAEGSSQPLVSPGSCLESFRQVPFIECHGRGTC
NYYPDSYSYWLASLDPKRMFSTPVPQTVKGPSLQSVISRCRVCKKQ
NT seq
4821 nt
NT seq
+upstream
nt +downstream
nt
atgggacggccaatgcttgcagttcttctcatcctctttgctgtgatgctgatggacatt
ggggccaacaattgtgtgtgcaatggaaaatccaggtgccactgtgcaggagtgaaaggc
agcaggggagagaaaggatttaaaggagttcaaggtctcccggggacagagggccgtcgt
ggatcagatggccaacctggtcctttgggaccgaagggcagcactgggcctgatggaccg
gacggggcaaaaggcgataagggatacgagggcaaagaaggccttgctgggtctcatggc
ttaccgggtatcccaggtttacaagggcctcctggaaccactgggagcacaggctgcaac
ggcactgagggagaagagggacctcctggtgttcccggcgtccatggccatgatggaagt
gcaggtccacctggtctccccggacctaagggtgagtcttgggtgtccacaaatgtaata
atggcgccaaatgggcctccaggaagggatggacagcggggatttccaggtcttgttgga
gagcatggactaccaggcgaccctggacgacggggttctgtggggtttcctggtccttct
gggtctccaggatcaaagggtcaagagggcataggcggtaccccagggcctcagggacta
aaggggagacaaggaccacaaggcccaccggggccaccgggtcagattaaggaatttctc
actaagagtctgttatcaaagggtgagaaaggaagcaacggagacataggaataaaagga
tgccatggtgaacaaggagacccaggtaatggctattacgtcaaaggagcaaagggagac
agaggagcgcagggtccagaggtaagatacctcctaatatttattacggaggtcctcaca
tttaggcctctatttttgattggggacacgtatgaaatacagtggtgtcctaaaacaggc
caatctgggattccaggccctagtggtcccaatgggtttccaggccccaaaggggaccct
ggggagcctggggatattcatccaggactcccaggtcaagatggggatcatggggatcaa
ggtcctcctggggatcagggcccacctgggcctcctgaagacagaactaacaggatttcc
aaaggtaatccgggaatgaagggaacaagaggtacgcctggacccacgggatatgatgga
ctgcatggaatgaaaggaagtaagggggagccctgttatgaatgtggattaggattccct
ggaccgccaggtcctcaaggcccacagggcacccctggacataatcaagggccaggtgct
aaaggtgatccaggctacccaggatctattggcttacctggaaaaccaggtccgtttggt
ccaatgggatatccaggccctccaggagaaaagggaaactcgtataccttccaaattggg
gaaaagggagaggaaggagaaccgggactgcctggccgacctggtgcggatgccctccct
gggtttcctggactacctggtcgcaggggggaccaaggccctccaggggattcgtacccc
ttccctggtgaagatggagaccggggtttcccagggccaccaggaccttcaggcagacaa
ggaccagttggctaccctgggccagtgggatatggccttgctggacctctgggaagtacc
ggagatgttggggtacctggcctaccagggcatcctgggattccaggccagaaaggcgaa
ccaagctacatccagactaaaggatatcccggaccacctggatttaaaggtctgcctggt
ttacttggaagccgaggtaatcccggagcaccaggtatcccaggaataccaggttttcaa
ggtcaaaaaggggtatcatttcctggaaagccaggaatcccaggacagaaaggggacaag
gggcagcgaggtctcccaggccctacagtggtgggcttgcctggtcggccaggttctaaa
ggaattcctggtcctgcaggcgtgaagggggatagcgggcctggatacccgggccccaga
ggatcccctgggcctgcaggagaagacggagctcaggggcccgtaggagatcctgggaac
cctggcctacctgggagcccaggagtacatggaaatccaggtttatcaggagaaaaggga
agtaaaggttctgtaggccccccaggactacccggtaataaagcttcatgtaatcaggat
ttacctgggccaaggggaccagaaggaccagatgggtatccaggacatccaggtcccaat
ggcctccctggggagaaggggaactcaggtttgccagggtttggtcgccctggtgtcccc
ggtgatcctggtgttcttgggcagtcagttccaggttcacctgggctccctggacaaaaa
gggataaaaggaaaaaacggcctgcccggtccatcaggactgagaggagaacctggacca
gatgggttaccaggatatggaccagatgggttgcctggaattgcaggaccaccaggccaa
ataggtgccccaggaccagatggagcactgggttccgtgggtccaccaggtgtgaatggt
gacccaggtatgacagggcctccaggaaccccgtctctggataaggatgagttcgggcaa
cccggggaacctggtgatccaggttcccctggtctatctggtgccaatggaaatactggc
tcgattggaccaaaagggcagagagggttagctggagcaccaggcagtcctggacaaaga
ggtcgcccaggtgatccaggtgttgatcaccaggttgtctcagaaggaagtcgaggacct
gctggagctccaggagactcaggagtcagagggcctccaggcccaaagggaataaaagga
gatcaaggacaatctggagagtcaggtccacgaggtgcaccaggtccaactggtaacaaa
ggcattaatggcgagccaaattataatggatgcggactgcctggaccagtaggacaaaag
ggggaaccaggaatgtgcaattcttgtgcgttgaagggtcagaaaggagatctaggttct
tttggaccaccaggtttaccaggacaccatggagccaaaggaaacccagggcctgatgga
caaaatggtccagcaggctatgaagggcctaaaggttcagatggacctccaggaaacaaa
ggacagccaggaccaaatggacctgcaggtgacccgggccagccaggagtcggtggttat
ccaggttctaaaggcaatcagggctgggatggcattcctggtccaccagggcagaaagga
gagactaatattataggagggacacctgggaggcgtggtgacacgggtcaacaaggtgag
tctcagttcacatctgtgtatttctatactgtaggtgtccctgggaaccctggtccccct
ggcttgtctgttacaggaagttatggaccaataggagaccaaggatttccaggtcaaaaa
ggggcccgtggtcctaaaggaccacgaggaagggaatgggcttgtgctcctgggtcaaaa
ggagaccatggtcatactggcaatcctggtgtcccaggctatcggggcttacctggcctt
ccaggtcctacacggccggggctaaagggagacagaggggacccaggtcttataggagcc
caaggccatagtggaccccaaggcgatccaggccctcaaggaccactgggtacaagaggc
agacctggaggtccgggaccaataggtgattttggttcttctggaggccatggactccct
ggtgtcaagggtgaccctggatacattcctggcccccccggtcaacctggggtaaaaggt
tttcctggacgacctggcttaaaaggcgtcaaggggataaatgaaccaggacctcccggc
gcacctggtccctttggtaaccgtggatccccagggattacgggaccatcaggatcacca
ggccaaccaggtcagccgggtgtcaggggcaagcagggttcaagcccagatggtcatcct
ggatttactggactcaaaggagacaaaggaagagcaggaccgccaggtcccgaaggcaga
cttggagacccaggccataagggtaatcaagggttgccaggcagtggcggtgcaggttat
gtggacagtttcctgattgccacacacagtcagagcaccaacgtccccgactgtcctcgt
ggcaccagcctcatcttctctggttactccttcctcttcatcaacggaaacgagagagct
cacggtcaggaccttggcaccatgggaagctgtctcccccgtttctccaccatgcccttc
ctgttctgtgacacggagagtaactgccgctatgcttctcgtaacgactattcctactgg
ttgtccactgacactcctatgccaaccaacatggcttccattacaggagatacactggcc
tcctacatcagcaggtgctcggtgtgtgaaaccacctccaatgtcatagccgtccacagc
cagacaactctgacacctgaatgcccccgatactgggagtcactatggacaggatactcc
tttgtcatgcaaacgggtgctggagcagagggctcctcccagcccctggtgtccccaggg
tcatgtctggaaagtttccgccaagtgcccttcatcgagtgtcatggcaggggaacgtgt
aactactaccctgactcctatagctactggctggcctccctagaccccaaaaggatgttc
agtactcctgttcctcaaacagtgaagggaccttctctacaaagtgtcatcagtcgttgt
cgggtctgcaagaaacaatga
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