Pungitius pungitius (ninespine stickleback): 119203524
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Entry
119203524 CDS
T07626
Symbol
rc3h1b
Name
(RefSeq) roquin-1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ppug03000
]
119203524 (rc3h1b)
04121 Ubiquitin system [BR:
ppug04121
]
119203524 (rc3h1b)
Transcription factors [BR:
ppug03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
119203524 (rc3h1b)
Ubiquitin system [BR:
ppug04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
119203524 (rc3h1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-C3HC4
zf-CCCH
zf-C3HC4_2
zf-CCCH_4
Prok-RING_4
zf_CCCH_4
FYVE
NS3_helicase_C
Baculo_IE-1
RING_XB3-XBAT31
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
119203524
NCBI-ProteinID:
XP_037313078
LinkDB
All DBs
Position
15:complement(11657930..11672701)
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AA seq
1131 aa
AA seq
DB search
MPVQAPQWTEFLLCPICTQTFEETVRRPISLGCGHTVCKMCLNKLHRKACPFDQTAISTD
IEQLPVNTALLQLVGGQVPKAQPVALITSPEDSQHYEEARQCVEELALYLKPLSNTRGVG
LSSTAQSMLSRPMQRKLVTLVHCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLEKGLVAVKTVVHGLVDFIQNHSKKGADPQQPPQHSKYKTYMCR
DMKQKGGCPRGASCTFAHSQEELEKYRKMNKRLAARLPGSGGLMSDEGLPLDVGVTRKPS
PLTNGSGGSSLPQLIARGTDTVPYELLRKPMKMDGGSPSAPGSPPDGMDSVLPKPGMPPH
AMAHSRMPVDHLSGVKHMPVVARGSPVYPQAPHPEMCYDSRPPPSASQYDPPQYPTGYPY
QQPPQYVPRDYMRNPPPPSESGPPYQDPYPGYGPPERSYQGPHSGPPFSYPHPSHHDRGR
HGNYNGPPPPPQPYPSQRDGLVRMSPAPLDMPPQSVGQANSLYHQEPSSRDRYPPDGYYT
QGAQPPPMRGYVRGPSYSGSQPSLDYLHRRRQELLSQLEERKVISPPPFAASPTLPHPFP
SDYPPEYGEENSKTMGKCREPDYAGQYSPWSCETIGSYIGTKDAKPKDVMGPGSMDMMNA
EAKSMREQSLEAPRRGAEVKDDDPIIPFGPQPTVSRFGAISRTSKTGYQTTGPGQAMASP
PQNPSSKHMAMSSEYAYGSHGGWGGASYPSHQTASSSQGHFSERMPMAAPDREQLKIELQ
QVNQQINQQTQMRSMEASSNSLLLQREGSALAGQAVQAGQGQAAAQQQPKWPAVGANTTP
VSSEQLSLELHQVEREIGKRTREMALENQVTHDVQQYKIKPAENGQPEHKTQLEEISMAL
GEVSNGSNSLQESAVGGSMLSLTNKTSALGLCSDPGAAGSEMQKNGVHSCS
NT seq
3396 nt
NT seq
+upstream
nt +downstream
nt
atgccagtgcaagcaccacaatggacagagttcctgctgtgcccgatctgcacacagaca
tttgaagagactgttcgccggcccatcagcttgggctgtggacacactgtctgcaagatg
tgcttgaacaagttgcaccgcaaggcctgtccttttgaccagacagccatcagcacagac
atcgagcagctacctgtcaacactgccctgttgcagctggtgggaggccaggttcctaag
gctcaaccagttgccttgattaccagtccagaggactcgcagcattatgaggaggccagg
cagtgtgtggaggagctggccctctacctcaaacctctcagcaacacccgaggtgtgggc
ctgagcagcacggcccagagcatgctgagtcgacccatgcagaggaaactggtgactctg
gtccactgccagctagtggaagaggagggccgggtcagagccatgagggccgcccgctct
ctgggcgagcgaacagtcactgaactcatcttacagcaccagaatccacagcagctctcc
tccaacctctgggccgctgtgcgtgcacgaggatgtcagtttctaggcccagccatgcag
gaggaagctctgaagttggttcttcttgctctggaggacggctccgcactttccaggaag
gtgttagttctctttgtggttcagaggcttgagccacgcttcccgcaggcctctaagacc
agtattgggcatgtggtgcagctactctacagggcctcctgcttcaaggtgaccaaacgg
gatgaagattcgtccctgatgcagctgaaagaggaattccgtacttacgaggctctgcgg
cgcgagcatgactctcagatagttcagatagccatggagggtggactgcgcatcgcaccc
gaccagtggtcctctctgttatatggagatcaatctcacaagtcccacatgcagtctatc
atagataagctgcagactccggcgtcttttgctcagagtgtccaggagctgacaattgca
ttgcagaggaccggagacccagccaacctaaaccgtctgcggccgcacctagagcttctg
gccaacattgatcccagtcctgatgctccccctcccacatgggagcagctggagaagggg
ctggtagcagtgaaaacagtggtgcatgggctggtggacttcatccaaaaccacagcaag
aaaggagccgaccctcaacagcctcctcagcacagcaagtacaagacgtacatgtgtcgt
gacatgaagcagaagggaggctgtcctcgtggagccagctgcacatttgcgcattctcag
gaagaactggagaagtatcgtaaaatgaataagcgcctggcagcccgcctccctggctca
gggggtctcatgtcggatgagggtcttcctcttgacgtcggagtgacccggaagccctcg
ccgctcaccaacggtagcggtggatcctccttgccccagcttattgcccgtggcaccgac
acggtcccgtatgaactgttgcgtaaacccatgaagatggatggagggagtcccagcgcg
ccaggatccccaccggatgggatggactctgtgctgcccaagcctggtatgccacctcat
gccatggcccattcaaggatgccagtggaccacctttctggggtgaagcacatgcccgtg
gtagcaagaggttcgcccgtctacccccaggcaccgcaccctgagatgtgctatgactct
cgcccgcccccctctgcttctcagtatgacccccctcaataccccacaggctacccttac
caacagccaccgcagtacgtccctcgggactacatgcgtaacccgccaccacccagcgag
tcgggacccccttaccaggacccatatcctggctatggccctccagagcgctcgtaccag
ggccctcactccggtccacctttctcttaccctcacccgtcgcaccatgacagaggtcgc
cacgggaactacaatggcccgccacctcccccacagccgtacccgtcacagagggacgga
ctggtccggatgagtcccgctcctcttgacatgcccccgcagtcagttggacaagctaac
tccctttaccaccaggagcccagttcacgtgatagataccctccagatggctactataca
cagggggcccagcctccacccatgaggggttatgtccgggggccttcatacagtggttca
cagcccagcctcgactacctgcacagacgccggcaggagctgttatcacagctggaggaa
aggaaggtcatatcccctccaccattcgctgcctcgcccactcttcctcatccctttccc
agcgactatcctccagagtacggcgaggagaactccaaaaccatggggaagtgcagagag
cccgactacgcagggcagtactctccctggtcttgtgaaaccattggctcctacattggt
acaaaggatgccaaacccaaagatgttatgggacctggcagcatggacatgatgaatgca
gaggctaagagtatgagggaacaatcactggaagctcctcggaggggcgcagaagtgaag
gacgatgaccccatcatcccatttggcccccagcccactgtgtcacgcttcggtgccatc
tcccggacctccaagacgggctaccagaccacaggtcctgggcaggcaatggcctccccg
ccacagaacccaagctctaaacatatggcaatgtcatctgaatacgcatatggaagccat
ggaggatggggtggagcctcatacccctcacaccagactgcctcctcctctcagggacac
ttcagtgagcgtatgcctatggcagctccagacagagagcagttaaagattgagctgcag
caagtcaaccagcagatcaaccaacagacccagatgcgaagcatggaggcttccagtaac
tctttgctgctgcagagggagggcagcgcgttggcaggccaggctgtgcaggccggccag
ggccaggcagcagctcaacagcagcccaagtggccagcagtgggagccaacaccacccct
gtctccagcgaacagctgagcctggagctccaccaggtggagagagagatcggcaagagg
acccgcgagatggctttggaaaaccaagtcacccacgatgttcagcagtataagattaaa
cctgcagagaatggacaaccagagcataaaactcagctagaagaaatctccatggctctt
ggcgaggtgtcgaacggatccaacagtctccaagaaagtgcagtgggcgggtccatgctg
tcactgaccaataagacgtctgctttgggcttgtgctctgatccaggcgccgctggttca
gaaatgcagaagaatggcgtccattcctgctcatag
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