Pungitius pungitius (ninespine stickleback): 119205145
Help
Entry
119205145 CDS
T07626
Symbol
rb1cc1
Name
(RefSeq) RB1-inducible coiled-coil protein 1
KO
K17589
RB1-inducible coiled-coil protein 1
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
119205145 (rb1cc1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ppug01009
]
119205145 (rb1cc1)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ppug04131
]
119205145 (rb1cc1)
03029 Mitochondrial biogenesis [BR:
ppug03029
]
119205145 (rb1cc1)
Protein phosphatases and associated proteins [BR:
ppug01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
119205145 (rb1cc1)
Membrane trafficking [BR:
ppug04131
]
Autophagy
Autophagosome formation proteins
ULK complex
119205145 (rb1cc1)
Mitochondrial biogenesis [BR:
ppug03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
119205145 (rb1cc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG11
ATG17_like
TBK1_ULD
ubiquitin
Motif
Other DBs
NCBI-GeneID:
119205145
NCBI-ProteinID:
XP_037313251
LinkDB
All DBs
Position
15:3321817..3333782
Genome browser
AA seq
1624 aa
AA seq
DB search
MKLYVFQVNNGSTLTFDTDLAVQTVLELKHAIQAKYKIAIQHQVLVVNGGECMAAERRVC
SYSAGTETNPIFLFNKEMILCDRDPTIPKTTFSIESEIQVKVEESLLMPAVFHTVASRTQ
LALEMFEVATKLCSFCERLVHDEHLQHQGWAAIMANLDDCTLSYQKLLMKFDSSYVTYQH
DLEEIKVKLSKLGTSVSVMARIPLLECLTRHCYKESMEKSSSTPGKDSDETEEEKSTDSV
LCAADAQRPSKSSASFPASGTTTSEPSGNQETNEMTDSGGLRAALLDDDDDDNDEEEEDD
APEFTNPSCFNVTLLDWINVQDRPNDVESVVRKCFDSINRLDPRIIQPFLTDCRDTIAKL
DNQNMKAIKGLEDRLYALDQMIASCKKLVNEQKELAQGFLANQKRAENLKDTSVLPDLCL
SHTNQLMIMLNNHRKLLDIKKKCTTAKQELANNLQVRLKWCCYVMLHADQDGEKLQALLR
LLTELIERVRVVEALSSVPRMYCLAVVEVVRRKMFMRHYREWAYALVKDGKGLYEAEKFK
RESFGKLFRKSFLRNRLFKGLDSWPPTSFCTRKPRRFDDELPDISLDDLQYLKSCCPVEV
QPFLMVPTMCDLTPLNRHVETLHKLVQAARSVDEMSQTITDLLNEQRTSFSQRSTVLTPE
SESITGTMTSRSSKTPPSLSLQSPNTQPLHVPVPAPLEDLSPDSIDAQTFDFETIGHPNM
DPVLHQGSLDLDSLAESPESDFMSAVNEFVIEENLASPNPISEPISPEMMVESLYSSVIN
AIDNKRMQDTTILERENSRITVLKQVIDKYQSAAEESHSNFRSVKDDLHHLRGMVLKEQH
DFGFVLRNLTTEVSNIVGNICQMQKSELTAQHQSELLSLRQPLEKQVQTLTEESQVNQNI
VKDVQHAMLELEGLMERKEKELTQLENEKERRAQTERDQVERIKNLEQVIDEQTHEIKAL
SLSRDSLTSQLENLHFEIECGQQKIRQELELVEQSHLMEMEEKLKQEHAATLETLNQGNQ
RAVEHLAAENSAKLSEAAERHATALKAKESQIMDTEARIAELAELRCKVEVELALKESEV
EEMRLLLEEAQMQQAEAVESLSQELADVKKQLDVKNEECEVDLAELRSLMRIEKDNCISE
LVDTHEEEAISLRNQLASLQWLAQNADKNHADQQQKLQRAFDQQVAALNDEKEKQLRTSQ
ELETELRTVISQLQADKDLLSHKVEQDRQAAERDSEDEAASKVASADAFKELEQQKEDTE
KRLLDRIQQLEDELHGRQSSKSNEGLPLHAEGRADAGAPLSLDSALQERLQQERASLQSQ
MDLLETRKNEEMQNLKTSLIAEQQTNFNTVLTREKLKKERIINELTEKWREVTQQQEKDK
ALIETLSEDRAIVMQEKKHLEEELNRLRGAALISSAFFAPNPSAPEAPDAGAAAAAAALP
LAGPFASDAGPETDRLASVAAIREDEQVDSAVEASLVPVHENILMSEEKQRILLLERTLH
MKEEENKRLSQRLMSQSMSSVSSRHSDKIAIRDFQVGDLVLIILDERHDNYVLFTVGPTL
YFLHSESLSALDLKPASGTSRRPWVLGKVMEKEYCQAKKAQNRFKVPLGTKFYRVKAVPW
NRKV
NT seq
4875 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgtatgtgttccaggtcaacaatggcagcacattgacatttgatactgatctt
gctgtccagactgtactggagcttaaacatgccatccaggccaaatataagattgcaatt
caacatcaagtccttgttgttaatggaggggaatgtatggctgcagagaggcgcgtctgc
agctacagtgctggcactgaaaccaacccgatattcctgttcaacaaagagatgatcctg
tgtgaccgggatccaacgatccccaaaaccaccttctctattgagagtgagattcaggtt
aaagtagaggagtctctactgatgcctgctgtctttcacactgttgcctctcgaacacaa
cttgctctggaaatgtttgaagttgccacaaaactttgctctttctgtgaacgattggtt
catgatgaacacctgcaacaccaaggctgggctgccataatggctaatctggacgactgc
actctctcttatcaaaaattgcttatgaaatttgattcttcatatgtaacctatcagcac
gacttggaggaaattaaagttaaactctcaaagctaggaacatcggtttctgtaatggcc
aggattcctctgctggaatgtttgacgagacactgttacaaagagagcatggagaagtca
agctcaaccccaggaaaggattcagatgagacggaagaagaaaagtccacagactctgtg
ctctgcgctgctgatgcacagaggccctccaagtcctcagcatccttccctgcttcgggg
acgaccacatctgaaccatctggcaaccaggaaaccaatgaaatgactgacagtggtggg
ctgagagctgcactactggatgatgatgatgatgataatgatgaggaggaggaggatgat
gctccggagttcaccaacccatcctgcttcaatgtcacacttttggactggatcaatgtg
caagaccggcccaacgatgtggaatcggttgtgaggaaatgctttgactccatcaatagg
ctcgaccctcggatcattcaacccttcctgacagattgtcgtgacacaattgctaagcta
gataatcaaaacatgaaagccatcaagggacttgaggacaggttgtatgctctagaccaa
atgattgccagctgtaagaagttggtgaatgagcagaaagaacttgctcagggatttctg
gccaatcagaagcgggcggaaaacctgaaggatacatctgtcctgccggatttgtgtctg
agtcacaccaaccagctgatgatcatgctgaacaaccacaggaagctgttggacatcaaa
aagaagtgcaccactgccaaacaagaacttgcaaacaaccttcaagtcagacttaaatgg
tgctgctacgtgatgcttcatgcagaccaggacggggagaagcttcaggctctcctcaga
cttctgacggagctaatagaaagagtgagggtggtggaggccctcagcagcgtgccacgg
atgtactgcttggctgtggtggaggttgtgaggcgaaagatgttcatgcgccactacaga
gagtgggcttatgcacttgtgaaggacgggaaaggactgtacgaggcggagaagttcaaa
agggaatcctttgggaaactcttcaggaagtctttcctcagaaatcgtttgttcaaagga
ctcgattcatggcctccaacctccttttgtacacgaaagcccagaaggtttgatgacgaa
cttccagacatctcacttgatgacctgcagtacttgaagtcttgttgtcctgtcgaggtg
cagcctttccttatggttcccacaatgtgcgacttaacgcccttaaatcgccacgtggag
acgcttcacaagctggtccaagctgcacggagcgtggatgagatgtctcaaactattacc
gacctgctaaatgaacaaaggacctccttcagtcagagatcaacggtgttgactccagag
tctgaaagcataacagggaccatgacatcaaggtcctccaaaaccccgccttctcttagc
ctgcagagccccaacacccagccactacacgttcccgtccctgctccgctggaggacctg
tccccggacagcatagacgcacaaacatttgactttgaaaccattggccacccgaacatg
gatccggtgctgcaccagggctccctggacctggattctctagcagagagccccgaatct
gacttcatgtccgctgtcaacgagtttgtgatcgaggagaacttggcctctccgaacccc
atcagcgaacccattagccccgagatgatggtggagtcgctgtattcctccgtcatcaac
gctattgacaacaagcgcatgcaggacaccacgatacttgagagggagaactcgaggatc
actgtgctaaaacaagtgattgacaagtaccaatccgccgcggaggagtcccactccaac
ttcagaagtgtgaaggatgatctccatcacttgagggggatggttttaaaagaacagcat
gactttggctttgttttgagaaatttgaccacggaggtgagcaacattgtgggcaacatc
tgccagatgcagaaatcggagctgacggcgcagcatcagagtgagcttctctcccttcgg
caaccgctggagaagcaggttcagacactaacggaggaaagccaagtaaaccagaacatc
gtcaaagatgtccagcacgcaatgctggagctggaggggctcatggagcgcaaagagaaa
gaacttactcagctcgagaacgagaaagagcgacgggcccaaacggaaagggaccaggtg
gaaaggatcaaaaacctggagcaggtgatcgacgaacaaacccacgagatcaaggcgctc
tcgctttcgagggactccctgaccagccagctggagaatctgcactttgagattgaatgt
ggccagcagaagatccggcaggagttggagcttgtggagcagtcccacttgatggagatg
gaggaaaagctcaagcaggaacacgcagcgaccctggagaccctcaaccagggtaaccag
agggccgtggaacatctggccgccgaaaatagcgcaaagttaagcgaggccgccgaacgc
cacgccaccgcgcttaaagcgaaggaaagccaaatcatggacacggaggctcgtattgct
gagcttgcggaactccgctgcaaagtagaggtggagttagccctcaaagagtccgaggta
gaggagatgaggctcctgcttgaggaggcccagatgcagcaggccgaggccgtggagtcc
ctcagccaagagctggcggacgttaaaaaacagctcgatgtgaaaaacgaggagtgcgaa
gtggacctggcagagctgaggagtctcatgaggatcgagaaggacaactgcatctccgag
ctggtggacacacacgaggaggaggccatttccctgcggaaccagctcgcctccctgcag
tggctggcccagaatgccgataagaaccacgccgaccagcagcagaaactccagcgggcc
ttcgaccagcaagtggctgctctaaacgacgaaaaagagaagcagctccggacctcccag
gagctggagacagaattgaggactgttatcagccaattgcaggcagacaaagacctgctc
tcccataaagtggagcaggaccgacaagcggccgagagagactcggaagacgaagcggcc
tctaaggttgcgtcggcagacgctttcaaagagttggagcagcagaaggaggacacggag
aagaggctgttggacagaatacagcaacttgaggatgagcttcatgggagacaatcctct
aaaagtaatgaagggctgccgctgcatgccgaggggcgtgccgacgccggggcacctctg
tctctggactcggcactgcaggagcggctgcagcaggagagggccagcctgcagtcccag
atggacctcctggagacaaggaagaacgaggagatgcagaacctcaagacgtcgctaatc
gcagagcagcagactaatttcaacacggttctgacccgagagaagctgaagaaagagcgc
atcatcaacgagctgacagagaagtggcgggaagttacccagcagcaggagaaggacaaa
gctctgatcgagactctctctgaggaccgagccatcgtcatgcaggagaagaaacacttg
gaagaggagctgaaccgcctgcgcggcgccgccctgatctcgtccgccttcttcgctccg
aacccctcggctccggaggccccggatgccggagcagcggcagcggctgcggcgctgcct
ttggccgggccttttgcctccgatgccgggcctgaaaccgaccgactggcctccgtggcg
gccattcgagaggacgaacaggtggactcggcggtggaagccagcctggtgcctgttcat
gagaacatcctgatgtcggaggagaagcagcggatactcctcctcgagaggactttacac
atgaaggaagaagaaaacaagcgcctcagtcaaagactgatgtctcagagcatgtcgtcc
gtgtcgtcacggcattcagacaaaatcgccatcagagatttccaggtaggcgatttggtt
ctaatcatcctggatgaaaggcatgacaattacgtgctgttcacagtcggtcccaccctc
tacttcctgcactcagagtctctctctgcactggacctcaaaccagcttcagggacgtcg
agacggccgtgggtactcggaaaggtgatggagaaggaatattgccaggcaaaaaaggca
cagaacaggttcaaggttcctttaggaaccaagttctacagagtgaaagctgttccatgg
aacagaaaagtataa
DBGET
integrated database retrieval system
