Pungitius pungitius (ninespine stickleback): 119205253
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Entry
119205253 CDS
T07626
Symbol
copa
Name
(RefSeq) coatomer subunit alpha
KO
K05236
coatomer subunit alpha
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ppug04131
]
119205253 (copa)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ppug04147
]
119205253 (copa)
Membrane trafficking [BR:
ppug04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
119205253 (copa)
Exosome [BR:
ppug04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
119205253 (copa)
Exosomal proteins of bladder cancer cells
119205253 (copa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
WD40_Prp19
Beta-prop_THOC3
WD40_WDHD1_1st
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
WDR55
TPR_COPA_B
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_1st
EIF3I
WD40_Gbeta
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
WD40_RFWD3
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
Beta-prop_WDR41
Beta-prop_Aladin
Beta-prop_SPT8
NBCH_WD40
Beta-prop_IFT140_1st
Beta-prop_DCAF4
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
119205253
NCBI-ProteinID:
XP_037313265
LinkDB
All DBs
Position
15:2813533..2823199
Genome browser
AA seq
1222 aa
AA seq
DB search
MLTKFETKSARVKGLTFHPKRPWVLASLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFH
KQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEYAWILSASDDQTIRIW
NWQSRTCVCVLTGHNHYVMCAQFHPSEDLVVSASLDQTVRVWDISGLRKKNLSPGAVETD
VRGLSGVDLFGASDAVVKHVLEGHDRGVNWAAFHPTMPLIVSGADDRQVKIWRMNESKAW
ELDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLGAH
PNLNLFAAGHDSGMIVFKLERERPAYAVHGNMLYYVKDRFLRQLDFNSSKDTAVMQLRSG
SKFPVFSMSYNPAENAVLLCTRATNLENSTYDLYSIPKESDSQNPDAPEGKRSSGLTAVW
VARNRFAVLDRMHSLLIKNLKNEIVKKVQVPSCEEIFYAGTGSLLLRDADGVTLFDVQQK
RSLATVKIAKVKYVVWSADTSHVALLAKHAIMICNRKLESLCNIHENIRVKSGAWDESGV
FIYTTSNHIKYALTSGDHGIIRTLDLPIYVTRVRGNSVYCLDRECRPRVLTIDPTEYRFK
LALVNRKYDEVLHMVRNAKLVGQSIIAYLQKKGYPEVALHFVKDEKTRFSLALECGNIEV
ALEAAKALDERSCWERLGEAALLQGHHQVVEMCYQRTKNFDKLTFLYLITGNLAKLRKMM
KIAEIRKDMSGHYQAALYLGDVSERVRILKNCGQKSLAYLTAATHGLNEEAEALKETFDP
EKETVPEVDPDAQLLQPSPPINPLDTNWPLLTVSKGFFEGAIAAKGKAGQMAADLDMEAP
GGEGWGDDAELQLDEDGFMDAQDGSGEEGGVKEEGGGWEVEEDLDLPPELDIPGGAGGGA
EDGFFVPPTKGMSPTQMWCNNSQLPVDHILAGSFETAMRLLHDQVGVVSFEPYKSLFMQT
LSRGRTCYLGLPSLPCLRGQPQRNWKDCGAKQGLPAVGLRLSDLIARLQQCYQLTTSGRF
EEAVERFRVILLSVPLLVVDNKQEIAEAQQLITICREYIVGLTMETERKKLPKDTLDQQK
RLCEMAAYFTHCNLQPVHMVLVLRTALNLFFKLRNFKTAASFARRLLELGPKPDVAQQTR
KILAACEKTLTDAHQLNYDPHNPFDLCAASFVPLYRGRPVEKCPLSGACYCPTYKGQICR
VTQATEIGKDVIGLRVSPLQFR
NT seq
3669 nt
NT seq
+upstream
nt +downstream
nt
atgttgacaaaatttgaaaccaagtcggcccgtgtcaaaggcctgactttccatccgaag
aggccatgggttctggcgagtttgcacaacggcgtcatccagctgtgggactatcgcatg
tgcacactgatcgacaagttcgatgagcacgatggtcccgtcagaggaattgacttccac
aagcagcagcccctgtttgtgtctggaggagatgattataaaatcaaggtgtggaactac
aaactgaggcgctgcctcttcactctccttggacaccttgactacatcagaactaccttc
ttccaccatgagtacgcctggattctgagcgcctcggatgaccagaccattcgcatctgg
aactggcagtcaaggacctgcgtctgtgtgctgaccggccacaatcactacgtgatgtgc
gcccagttccacccatctgaggacctggtggtgtcagccagtctggaccagaccgtgcga
gtgtgggatatctccggtctgaggaagaagaacctgtcccccggcgccgtggagacggac
gtgcgcggcctctccggtgtcgacttgttcggtgcctctgatgcggttgttaagcacgtc
cttgagggtcacgaccggggggtcaactgggccgccttccaccccaccatgccgctcatt
gtgtccggggccgacgaccggcaggtcaagatctggaggatgaacgagtccaaagcgtgg
gagctggacacgtgccgcggtcactacaacaacgtgtcctgtgccgtcttccacccgcgc
caggagctcatcctgtccaactctgaggacaagagcatccgggtgtgggacatgtccaag
aggaccggagtgcagaccttccgccgggaccacgatcgcttctgggtgctgggggctcac
ccgaacctcaacctgtttgctgccggtcacgacagcggcatgatcgtgttcaagctggag
cgcgagcgccccgcgtacgccgtacacggcaacatgctgtactacgtcaaggaccgcttc
ctccgccagctggacttcaacagcagcaaggacactgctgtgatgcagctgcgcagtggg
tcgaagttcccggtgttcagcatgtcctacaaccccgctgagaacgcagtcctgctctgc
accagggcgaccaacctggagaacagcacctatgacctctactctattcccaaagaaagc
gattctcagaaccctgatgcaccggaggggaagaggtcgtctggtctgactgccgtctgg
gtggccaggaacaggtttgctgtcttggaccgtatgcattctctgctgatcaagaacctg
aagaacgaaatcgtgaagaaggtccaggtgccgagctgcgaggaaatcttctacgccggc
acgggctcgctgctgctgcgagacgccgacggcgtcacgctgttcgacgtgcagcagaag
cgctctctggccacggtgaagatcgccaaggtgaagtacgtggtgtggagcgccgacacc
agccacgtggctctgctggccaagcacgccatcatgatctgcaaccgcaagctggagagt
ctttgcaacattcacgagaacatcagagtgaagagtggagcctgggacgagagcggtgtc
ttcatctacaccacctccaaccacatcaaatacgccctcacctccggtgatcacggcatc
atcaggaccctggacctgcccatctacgtgacccgcgtccgagggaacagcgtttactgc
ctggacagggagtgcaggccgcgcgtcctcaccatcgaccccacagagtaccgcttcaaa
ctggccctggtcaaccgcaaatatgatgaggtcctccacatggtgcgtaatgccaaactg
gtgggccagtccatcattgcctacctgcagaagaagggctacccggaggtggcgcttcac
tttgtgaaggatgagaagacccgcttcagtctggctctggagtgtgggaacatcgaggtc
gctctggaggcggccaaggctttggacgagcgcagctgctgggagcgcctgggtgaggcg
gcgctgctgcagggtcaccaccaggtcgtggagatgtgctaccagaggaccaagaacttc
gacaagctcaccttcctctacctcatcaccggcaacctggccaagctgcgcaagatgatg
aagatcgctgagatcaggaaggacatgagcggtcactaccaggccgctctctacctggga
gacgtcagtgagagggtccgcatcctcaagaactgtggacagaagtctctggcctacctg
accgccgccactcatgggctgaacgaagaggccgaggcgctgaaggagacctttgacccg
gagaaagagacggtgccagaggttgatcccgatgcacagctgctgcagccttctccaccc
atcaaccctctggacaccaactggcctctgctaacagtgtcaaagggcttcttcgaggga
gccattgcggcaaaggggaaagcaggtcagatggctgccgacctggacatggaggccccg
ggaggagagggctggggagacgatgccgagctccagctggatgaagatggtttcatggat
gcccaggatggctccggggaagaaggtggcgtgaaagaggaaggaggaggctgggaggtg
gaggaagacctggacctccctccagagctggacataccgggcggtgcaggtggaggagcc
gaagacggcttcttcgtcccaccgaccaaaggaatgagccccacgcagatgtggtgcaac
aactcccagctgccggtggaccacatcctagctggctcctttgaaacggctatgcgattg
ctccacgaccaggtgggagttgtgagcttcgagccctacaagtcgctgttcatgcagacg
ctgtccaggggccgcacctgttacctgggcctgccctcgctgccctgcctgcgtggccaa
ccgcagagaaactggaaggactgcggcgcaaagcagggattgcccgccgtgggcctgcgc
ctctccgacctcatcgcccgcctgcagcagtgctaccagctgaccacgtccggccgcttc
gaggaagccgtcgagcgcttcagggtcatcctgctgtcggttcctctgctggtggtggac
aacaagcaggagatcgcggaggcccagcagctgatcaccatctgcagggagtacattgtg
ggtctgaccatggagacggagaggaagaagttgcctaaagacaccctggatcagcagaag
aggctgtgtgagatggctgcttatttcacccactgtaacctccagccggtccacatggtg
ctggtgctgcgcaccgctctgaacctcttcttcaagctgcgcaacttcaagacggccgcc
agtttcgcccggcggctcctcgagctggggcccaagccggatgtcgcgcagcagactcgc
aagattttggcggcctgtgagaagaccctgaccgacgcccaccagctgaactacgacccc
cacaatccattcgacctgtgcgccgcctctttcgtccctctgtaccgcggacgtcccgtt
gagaagtgccctctgtccggggcctgctactgccccacctacaaaggccagatctgcagg
gtcacacaggcgactgagatcggtaaggatgtgatcggcctgcgtgtgagtccactccag
ttccgttag
DBGET
integrated database retrieval system
