Pungitius pungitius (ninespine stickleback): 119205376
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Entry
119205376 CDS
T07626
Symbol
lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03030
DNA replication
ppug03410
Base excision repair
ppug03420
Nucleotide excision repair
ppug03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
119205376 (lig1)
03410 Base excision repair
119205376 (lig1)
03420 Nucleotide excision repair
119205376 (lig1)
03430 Mismatch repair
119205376 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppug03032
]
119205376 (lig1)
03400 DNA repair and recombination proteins [BR:
ppug03400
]
119205376 (lig1)
Enzymes [BR:
ppug01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
119205376 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
119205376 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
119205376 (lig1)
DNA replication proteins [BR:
ppug03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
119205376 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
119205376 (lig1)
DNA repair and recombination proteins [BR:
ppug03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
119205376 (lig1)
NER (nucleotide excision repair)
Other NER factors
119205376 (lig1)
MMR (mismatch excision repair)
Other MMR factors
119205376 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
119205376
NCBI-ProteinID:
XP_062413789
LinkDB
All DBs
Position
15:complement(2342707..2359382)
Genome browser
AA seq
981 aa
AA seq
DB search
MQRSIASFFQPKCQDKGPQKKASAGPLKKPVKSPLKVQNGAREADSPVKRVAKRSRQILD
SDEEEEAEEEAPAAKEQGDKEALDKKEKKDGVFKAVPAPLSPPPAPPAAPAAPASSASPG
TRISPSGIAKRKTARKMFPKRKLNEGGSSSGGDDESQKDEAEAKEAPGQQSKRPRVEGAA
GITEEPMDEGAEEESAIKAATKAHGPNEEVEEEEEEKEEEEEEEKESVKRKSSDEKVKKA
EGAEKKNEAKEKTDDEKGLAVANKKKKKEEEEEVEVEGEVVEKDTREEEQSPKSQTARKR
KEAKEQKDKEPLKKAPISSFFAPRKAAVKTEKDEGERRTSGERKTSGERKTSEEETKDTK
GESTAGPTDFDPSGPGYHPVDHACWKRGQKVPYLAVARTFEKIEEDSGRLRNIETLSNLL
RSVLLLSPDDLLCCVYLCLNQLGPAYLGMELGVGETVLMKAVAQATGRQLDKIKAEAQEK
GDLGLVAESSRSNQRMMFQPASLTAGGVFRKLKEIAGMSGNSAMNKKIDIIKGLFVACRF
SEARYIVRSLAGKLRIGLAEQSVLAALSQAVCLSPPGQGFPPAVLDAGKGKSAESRRSWI
EEKSLILKQTYCEMPNYDVLIPVLLKEGIDELPNHCKLTPGVPLRPMLAHPTKGVGEVMK
RFDEAAFTCEYKYDGERAQIHILESGEVRVFSRNQEDNTSKYPDIVSRVPTVKKGSVASC
VLDAEAVAWDREKKQIQPFQVLTTRKRKDVEASEITVQVCVYAFDLLYLNGESLVRQPLC
RRRALLKESFSEVEGEFVFARSIDSDNTDAIAEFLEQSVRDSCEGLMVKTLEKDATYEIA
KRSHNWLKLKKDYLDGVGDTVDLCVIGAYLGKGKRAGAYGGFLLACYDEDNEEFQSVCKI
GTGFKDEDLEQHYKFLKVRRRSWMVERDRSSAASSSSFSSSSSPFAVKAITSSLRASLGS
RFTDLNGDFQAKVRMTVCEPS
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggagcattgcatcctttttccagcccaagtgccaggacaagggcccccagaag
aaagcctcggctggacccctgaaaaagcccgttaaaagtcctctcaaggtgcagaacggc
gcccgggaggccgactcgcccgtcaagagggtcgccaaacgcagccgtcagatcctggac
agcgacgaggaggaggaggcggaggaggaggcccctgccgccaaggagcaaggagacaaa
gaagccctcgataagaaagaaaagaaggacggcgtcttcaaggccgtccccgcccctctg
tctcctccacctgcacctccagcagcgcccgccgctccggcttcctccgcttcacctggg
acccggatctccccctccggcatcgccaaacgcaagacggccaggaagatgttccccaag
cggaagctcaacgagggcgggagcagcagcggcggcgacgacgagagccagaaggacgag
gcggaggccaaggaggcgccgggtcagcaaagcaagcgaccccgcgtggagggggccgca
gggatcaccgaggagcccatggacgagggcgccgaggaagaaagcgccataaaggctgcg
accaaggctcacggcccaaatgaagaggtggaggaggaggaggaggagaaggaggaggag
gaggaggaggagaaggagagtgtgaagagaaagagctctgatgagaaagtaaagaaagct
gagggggcggaaaagaaaaatgaagccaaagagaaaactgatgatgagaaaggactcgct
gtggccaataagaagaagaagaaggaggaggaggaagaggtggaggtggagggggaggtg
gttgaaaaggacaccagagaggaagaacagagcccaaaaagtcaaacggcgagaaagcgg
aaagaagccaaagagcagaaagataaggagccactcaagaaggctcccatcagcagtttc
tttgctccgagaaaagccgcagtgaagactgagaaggacgaaggggagaggaggacgagc
ggcgagaggaagacgagcggcgagaggaagacctcggaggaggagaccaaagacacgaaa
ggcgagtcgaccgcggggcccacggacttcgacccgtccgggcccggctaccaccctgtg
gaccacgcctgctggaagcggggccagaaagtgccgtacttggcggtggcacgcaccttc
gagaagattgaagaggactctggcaggctgaggaacatcgagacgctgtccaacctgctg
cgctccgtgctgctgctctctccagacgacctgctgtgctgcgtgtacctgtgtttgaac
cagctcggccccgcctacctggggatggagctcggcgtcggcgagacggtgctgatgaaa
gctgttgctcaagcaaccgggcgacaattggacaaaatcaaggcggaggcgcaggagaag
ggagacttgggcctcgtggccgagagttcccgtagcaaccagcgcatgatgttccagccg
gccagtctgacggcggggggcgtgttcaggaaattgaaggaaatcgccggcatgagcggg
aactcggccatgaataagaaaatcgacatcatcaaaggcctctttgtggcgtgtcggttc
tccgaggcccgctacatagtcaggtccctggcggggaagctgcggataggcctggccgag
cagagcgtcctcgcggctctgagccaggcggtgtgcctgtccccccccggacaaggtttc
ccccccgccgtgctcgacgctgggaagggaaagagcgccgagagccggcggtcctggatc
gaagagaagagtctcattctcaaacagacctactgcgagatgcccaactacgacgtcctc
atccccgtcctgctgaaagaaggcatcgacgagctgcccaatcactgcaagctgactcca
ggtgtgccgctgagacccatgttggcccaccccaccaaaggcgtcggcgaggtgatgaag
aggttcgacgaggcggcgttcacctgcgagtacaagtacgacggggagcgcgcacagatt
cacattctggagagcggcgaggttcgggtgttcagccgcaaccaggaagacaacaccagc
aaataccccgacatcgtctctcgtgttcccacggtgaagaagggctcggtggcgtcctgc
gtcctggacgccgaggcggtggcctgggatcgggagaagaagcagatccagcccttccag
gtgctcaccacccgcaagaggaaggacgtggaggcctcggagatcacggtccaagtgtgc
gtctacgcctttgacctcctgtatctcaacggcgagtcgctggtgcgacagccgttgtgt
cggcgtcgggctttgcttaaagaaagtttctcagaagtggaaggagagtttgtgttcgcc
cgatccatcgactccgacaacacagacgccatcgcagagttcctggagcagtctgtccga
gactcctgcgagggtctgatggtgaagactctggagaaggacgccacctatgaaatcgcc
aagcgctctcacaactggctcaagctgaagaaggactacctggacggcgtgggcgacacg
gtggacctgtgtgtgatcggcgcctacctggggaagggcaagcgggccggcgcctacggg
ggcttcctgctggcctgctacgacgaggacaacgaggagttccagtccgtctgcaagatc
gggacgggcttcaaggatgaagatctggagcagcattacaagttcttaaaggtacggcgt
cgctcgtggatggttgaaagggaccgaagtagcgcagcttcttcttcttctttttcctct
tcttcctcccccttcgctgtgaaagcaatcacttcctcattaagggcgtcgctcggttcc
aggtttacggacctaaatggagactttcaggccaaagtgagaatgacggtgtgcgaaccc
tcctga
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integrated database retrieval system
