Pungitius pungitius (ninespine stickleback): 119207427
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Entry
119207427 CDS
T07626
Symbol
exosc4
Name
(RefSeq) exosome complex component RRP41
KO
K11600
exosome complex component RRP41
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119207427 (exosc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppug03019
]
119207427 (exosc4)
Messenger RNA biogenesis [BR:
ppug03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
119207427 (exosc4)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
119207427 (exosc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
119207427
NCBI-ProteinID:
XP_037313600
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Position
15:3670051..3671680
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AA seq
245 aa
AA seq
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MAGVELLSDQGYRLDGRKATELRKLQARMGVFAQADGSAYLEQGNTKALAVVYGPHEVRG
SRSRSRHERALINCQYSMATFSTAERKRRPHGDRKSTEMSLHLKQTFEAAVMTQLYPRSQ
IDIYVKILQSDGGNYSVCVNAATLAVIDAGIPMRDYVCACTVGFVDETPLADLCYAEEGG
GVSSLALALLPRGGQIALLQMDARLHQDHLDPLIEAAMTACKGVSKLLDEVVRRHLQEVS
VLSGE
NT seq
738 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcgtggagctgctgtcggaccagggctaccgcctggacggcaggaaagccacc
gagctgcggaagcttcaggcccgcatgggtgtgttcgctcaggcggacggctccgcgtac
ctggagcagggaaacaccaaggctctggccgtggtctacggcccgcacgaagtacgaggt
tcacgcagccggagtcgccacgagcgagccctgatcaactgccagtacagcatggccacc
ttcagcacggcggagaggaagaggaggccgcacggcgaccgcaagtccaccgagatgagc
ctccacctcaagcagacgtttgaagccgccgtgatgacgcagctctacccgcgctctcaa
atagacatctacgtcaagattctgcagtcggacggcggcaactacagcgtgtgcgtgaac
gccgccaccctggcggtgatcgacgccggcatccccatgcgggactacgtgtgcgcctgc
accgtggggtttgtggacgagacgcccctcgccgacctctgctacgccgaggaaggcggc
ggcgtgagctcgctggccttggcgctgctgccccggggcgggcagatcgctctgctgcag
atggacgccagactacatcaggatcacttggatccgctcatcgaggccgccatgacggcg
tgcaaaggtgtcagcaagttgctggatgaggtggtgcgacgacatctgcaggaggtttct
gtgctctctggagagtga
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integrated database retrieval system
