Pungitius pungitius (ninespine stickleback): 119209112
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Entry
119209112 CDS
T07626
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03013
Nucleocytoplasmic transport
ppug03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
119209112
03015 mRNA surveillance pathway
119209112
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppug03019
]
119209112
Enzymes [BR:
ppug01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
119209112
5.6.2.5 RNA 5'-3' helicase
119209112
Messenger RNA biogenesis [BR:
ppug03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
119209112
mRNA cycle factors
Common to processing body (P body) and stress granule
119209112
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
NAT10_TcmA_helicase
DEAD
nSTAND3
UvrD-helicase
SRP54
AAA_16
UvrD_C_2
AAA_22
AAA_25
Motif
Other DBs
NCBI-GeneID:
119209112
NCBI-ProteinID:
XP_037314035
LinkDB
All DBs
Position
15:9282891..9295805
Genome browser
AA seq
1113 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYDFTDFTLPSQTQTAGQTRSQLDSQVNG
PDGVLQNGDTHVLKAGQLLAELNFEEDEEDTYYTKDLPLHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKSKEMTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPTASLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAAPWKGIGHVI
KVPDNYGDEIAIELRSSAGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYI
YHKLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT
SATVVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLAL
HNQTRNMESMPELQKLQQLKDEAGELSSSDEKRYRALRRTAERELLMNADVICCTCVGAG
DPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLS
QSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ
PDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQRS
YLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNV
ALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVN
TINPGGRFMSTAMYDAREALIPGSVYDRSSNGRSSNMYFQTHDQIGMIGTGPSPMTSLNI
PIPFNLVMPPIPPPGYIRQVNGPSAGRGGGMKGKAGSGGGGGTRGGRQRNRGNMGNHSGG
NGGADRHGGHMSGSQASQDLGSQPFSQGPLTQGYSNMSQPSQMSQQGLSQPELSQDSYLG
DEFKSQIDVALSQDSTYQGERAYQHGVTGLSQY
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgaggcgtacgggccgagctcgcagactctgacgttcctcgacaccgaggaa
gccgagctgctgggagcggacacccagggctccgagtacgacttcaccgacttcaccctg
ccgagccagacccagaccgcaggccagacccgcagccagctggacagccaggttaatggc
cctgacggcgtactgcagaatggggacacacatgtcctaaaagccggtcagctgctggcc
gagttgaactttgaggaggatgaggaggacacgtactacaccaaagatctacctctccat
gcctgcagttactgtggtattcatgatccagcctgtgtggtctactgtaacaccagcaag
aaatggttttgtaatggtcgcggaaacacttccggcagccacattgtgaaccatctggtg
agagcaaagtccaaggagatgaccttgcataaagatggccctctgggggaaacagtattg
gagtgttacaactgtggctgtcgcaatgtcttcctcctgggtttcatccctgctaaagcc
gactcagtggtggtactactgtgccggcagccatgtgccagccagagcagcttgaaggac
atcaactgggacagctcgcagtggcagcctctcattcaggaccgttgcttcctgtcctgg
ctggtgaaaatcccttcagagcaggagcagctcagggctcgtcagatcaccgcccagcag
atcaacaaacttgaagaactgtggaaggaaaatcccactgcgagcttagaggacctggag
aagcctggtgtggatgaggagccccaacatgtgctgctccgctatgaggatgcctaccag
taccagaacatctttggtcctctcgtgaagctggaggctgactatgataaaaaacttaaa
gagtctcagactcaggacaacatcactgtcagatgggacttgggcctgaataaaaaaagg
attgcttatttcactcttcccaagaccgactcagacatgcgactgatgcagggagatgaa
atttgcctgaggtacaaaggagacctggccgctccatggaaaggcattggacacgtcatc
aaagtccccgacaactatggggatgaaattgccatagagctgaggagcagtgccggggct
ccagtggagatcccacacaattttcaggtcgactttgtgtggaagtccacttcctttgac
aggatgcagagtgccctgaagacgtttgcagtggatgaaacttcagtgtctggttacatt
taccacaagctgctgggacatgaggtagaagatgtggtcatcaagtgtcagctgcccaaa
cgcttcactgctcaaggcctccccgaccttaaccactcacaggtgtacgctgtgaagacc
gtgctgcagcgtcctctcagtctgatccaaggtcctcctggcacggggaagactgtaacc
tctgcgactgtcgtctaccacctggccagacagggcaacgggccagtgctggtgtgcgct
cccagtaacattgctgtcgaccagctgactgagaagatccatcagacaggcctcaaggtt
gtgaggctgtgtgctaagagcagggaggctatcgactcgcctgtgtccttcctggctctg
cacaaccagacccgtaacatggagagtatgccagaacttcagaagctccaacagctgaag
gacgaggctggagagctgtcctcctctgacgagaagcgatacagagctctgagacgcact
gcagagagggagctgcttatgaacgccgatgtgatctgctgtacctgtgtcggggcgggg
gatcctcgtctggccaagatgcagttccgctcaatccttattgatgagagcacccaggcc
actgaacccgagtgcatggtgcccgtcgtcctgggggccaaacagttgattctggtaggt
gatcactgccagctgggccctgtggtgatgtgtaagaaggcggccaaagcaggtctgtcc
cagtctctgtttgagcgtctggtagttttgggcatccggccaatccgtctgcaggtccag
taccgcatgcatccggccctcagcgccttcccctccaacatcttctatgagggctctctg
cagaatggagtcactgctgcggaccgtgtgaagaagggatttgacttccagtggccgcag
cctgacaagcccatgttcttttatgtcacccaaggtcaagaggaaatagcgagctctgga
acatcttatctcaacaggactgaggccgccaatgtggagaaaataaccacaaggttgctg
aaagctggagcaaaacctgaccagattggcatcattacaccttatgagggacaaaggtcc
tacctggttcagtacatgcagttcagtggctccctccataccaaactctaccaggaggtg
gaaatagccagcgtggacgcctttcaaggcagagagaaagacttcattattctgtcctgt
gtgagggccaatgagcaccagggcatcggcttcctcaatgatcccaggcgtctcaacgtg
gcactcaccagagccaggtatggtgtgattattgtgggaaaccccaaagccctgtccaag
cagcctctgtggaaccacctgttgaactactacaaggaacagaaggtcctggttgaaggt
cccctgaacaatctgagggagagcctcatgcaattcagcaagccccgcaagctggtcaac
accatcaacccaggggggcgatttatgagcacagccatgtatgatgcccgagaagccctc
attcctggatctgtttacgaccgcagcagtaacggacgttcgtccaacatgtatttccag
acccacgaccagatcggtatgatcggcacaggccccagtcccatgacttccctgaacatc
cccatccccttcaaccttgtgatgccccccatacctccacctgggtacataagacaggtc
aatgggccctcagcaggccgtggtggaggaatgaaaggcaaggcaggcagtggaggagga
ggaggtactcgaggtggtcgtcaaagaaaccgcggcaacatgggaaaccacagtggagga
aatggaggggccgaccggcatggaggccacatgagtggcagtcaggccagccaggatctg
ggctctcagcccttctctcagggtcctctgacgcagggctacagcaacatgagccagccg
tcccagatgagccagcagggactctcccagcctgagctttcacaggacagttacctagga
gatgagttcaagtcccagattgacgtggctttgtcccaggactccacctaccagggggag
cgggcctaccaacacggtgtgactggactgtctcagtactag
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integrated database retrieval system
