Pungitius pungitius (ninespine stickleback): 119209141
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Entry
119209141 CDS
T07626
Symbol
tnr
Name
(RefSeq) tenascin-R isoform X1
KO
K06252
tenascin
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug04510
Focal adhesion
ppug04512
ECM-receptor interaction
ppug04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119209141 (tnr)
04518 Integrin signaling
119209141 (tnr)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
119209141 (tnr)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ppug00536
]
119209141 (tnr)
Glycosaminoglycan binding proteins [BR:
ppug00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119209141 (tnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
Fibrinogen_C
EGF_TEN
EGF_Teneurin
FN3_DSCAM-DSCAML_C
Fn3_Dep-1_3rd
EGF_Tenascin
Pur_ac_phosph_N
EGF_2
FN3_Tor_3rd
Interfer-bind
DUF4998
DUF7949
Motif
Other DBs
NCBI-GeneID:
119209141
NCBI-ProteinID:
XP_037314096
LinkDB
All DBs
Position
15:complement(11941322..12063026)
Genome browser
AA seq
1386 aa
AA seq
DB search
MPLARQHHRATAPTAVWILAFALFIALQGAAHAAPSGDNKLVRTTRVRRQAPGGNQPPSA
PSANESLQEQPLVFNHVYNINVPLESLCSVDLDASAPPAPGDGARTELGSRASAEGPVDH
RGPTEYTEQTLDADSQVTFTHRINIPKAACGCPTTTTIQQLATRVEMLEREVSLLRAQCG
SGCCGESSAMGHLDFVPGCSGHGSFSFDLCGCICEEGWGGKNCSEARCVDDCSGQGVCVE
GECICDRDFGGDNCSEPRCPADCSGRGLCVDGECVCEESFTGEDCAVGRCLNDCSDQGLC
ANGTCQCRPGYVGEDCSLVYCANNCSKKGVCREGFCVCQDGFAGDDCNSVAPAMNVKIRG
VTDCSVDVEWEGSVVLTDFLVTYTPSSPGGVQLEIRIPGNTTAYTISGLEAGMEYNINVF
AVINNSISVPASITVSTYLSNPDGLVFKYITETSVEVQWLPFYYSFDGWEISFIPKDNDG
GMTAQLPSTITSFVQTGLRPGEEYTVNLVALRDQGRSQPVTATVITLIDGPTLLIVRDVS
DTVAFVEWTPPKAKIDQIVLRYGLVGGEGPRTTFRLQPTLSQYSLQVLRPGSRYEVSVSG
VRKGNESGSISTEFTTALSFFSEIDAPKNLRLVSKTSTSLEIEWDNSEAEVEGYQVVYST
LAGDLYDKVIVPRNEGTTTKTSLTDLLPATEYGIGISAMKGSNQSAPATMNARTGLDVPM
DLTVMASTDNTITLVWGVVQGPIDHYKVTYTSSSGITAELNVPKDVTTTTLIDLEPGTEY
TVTVAARRGRQQSTAATIDAFTGIRPVTHLYLSEVTSDSVLVAWSAPAPPADLFILSYSS
ADGTDTSKVTLDGSKMRSQVLGLLPSTQYTVSLITIQGDVTSEPITASLTTGMDPPKEMT
VSDVTEDAVTISWIKPLAPFEYYKLSYQSARGRVDSVVIDSDVNNYTLSSLFPATEYEIS
LNAVRASQESKVVSTSVFTAMDMPSELTALNITPRGTLLRWNPPVSSVDNYVLTLTYNQV
TADTFLVEGNRQEHQLSNLKPSTTYSVALYATKGPLTSGTVITNIQTPMDSPLNLTASEV
NHRSALISWQPPIAEIDNYMLTYRSTDGSRKELILDAEDTWIRLEGLAETAEFTVNLQAA
RGLDTSAVVSTTFTTGSRLFATPQNCAQHLLNGETLSGVYTVYINRDPSQGVQVYCDMTT
DEGGWIVFQRRQNGLTDFSRKWSDYRVGFGNLEDEFWLGLDNIQRIAAQGRYELRIDMKD
GQESVYANYDKFSIGDAKNHYKLRLGEYNGTAGDSLSYHQGRPFSTKDRDNDIAVTNCAS
SYKGAWWYKNCHRANLNGKYGESRHSQGINWYHWKGHEFSIPFVEMKMRPFNFRSISSKR
RRSAPV
NT seq
4161 nt
NT seq
+upstream
nt +downstream
nt
atgccactggcgcgccagcatcaccgggccactgcgcccacagcagtctggatccttgct
tttgctctgtttattgctctacagggcgccgctcacgctgctccgtcaggagacaacaag
ctggttcgtaccaccagagtgaggcgtcaggccccgggggggaatcagcccccctccgct
ccctcagccaacgagagcctgcaggagcaacctctggtcttcaaccacgtctacaacatc
aatgtccccttggagtccctgtgctccgtggacctggacgcctccgcgccacctgccccg
ggggacggtgctcgcactgagttggggtcaagagcctcggcggaggggccagtggatcac
aggggaccgaccgaatacacggagcagacgctggatgcagacagccaggtaacattcact
caccgcatcaacatcccaaaagctgcatgcggctgtccgacaacaaccacaatccagcaa
cttgccaccagggtggagatgctggagagagaagtttccctcctcagagctcagtgtggg
tctggatgctgtggggagagctccgccatgggtcatttagactttgtcccaggctgcagc
ggccacggcagcttcagcttcgacctttgcggctgcatctgcgaggaaggctggggcggc
aaaaactgctcggaggcccgctgcgtggacgactgctccggccagggtgtgtgcgtggaa
ggcgagtgcatctgcgaccgcgacttcggcggcgacaactgctcggagccgcggtgcccg
gcggactgctcgggccgcgggctctgcgtcgacggggagtgcgtgtgcgaagagtccttc
accggcgaagactgcgcggtcgggaggtgtctgaacgactgctcggaccagggcctgtgc
gccaacgggacgtgccagtgcaggcccggctacgtgggggaggactgctcgctggtctac
tgcgccaacaactgcagcaagaagggagtctgcagggagggattctgtgtctgccaggac
ggcttcgcaggggacgactgcaattccgtggctccggccatgaatgtgaagatacgaggc
gtgacggattgctcggtggacgtggagtgggaggggtctgttgtgctgacagacttctta
gtgacctacacaccaagcagccccggaggtgtgcaactggagataaggattccaggcaat
accaccgcctacactatctcgggcctggaggccggcatggagtacaacatcaacgtgttt
gccgtcattaacaacagtatcagcgtccctgccagcatcaccgtttccacctatctctcc
aatccggatgggttagtcttcaaatacatcacagagacgtcagtggaggtccagtggtta
cccttctactattccttcgatggatgggagatcagcttcatccccaaggacaatgatggg
gggatgactgcacagctgcccagcaccatcacttcctttgttcagactggtttgagacca
ggggaggagtataccgtcaacctagtggcgctccgagaccagggtcgaagccagccggtc
actgctactgtcataacactgattgatggccctactctgctgattgtgcgcgacgtgtcc
gacaccgtagcgtttgttgagtggacaccgccgaaagcaaagattgatcagattgtgcta
cgttacggcctggtgggaggagagggcccgcggaccaccttccgcctccagcccacactc
agccagtactccctgcaggttctgcgccccggctcccgttacgaggtgtccgtgagtgga
gtgaggaagggaaacgagagcggctctatttccactgaatttactaccgctttatcgttc
ttctcagagatcgatgcccccaagaatctgagactcgtgtccaagacctcgaccagcctg
gagatcgaatgggacaacagcgaggccgaggtggagggctaccaggtggtgtacagcact
ttagcaggagacctgtacgataaagtcattgtgccacgcaacgagggaaccaccacaaag
acctctctcacagacctgctgcccgccacggaatacggcatcggcatttctgccatgaag
gggagcaaccagagcgcaccggcaaccatgaacgccaggacgggcctggatgtgcccatg
gatctgactgtgatggcttcgacagacaacaccatcactctggtgtggggcgtggtgcag
ggccccatcgaccattacaaggtcacctacacatcctcctccggcatcactgctgagctg
aatgtgcctaaagatgttaccaccaccactctgattgaccttgagcccgggactgagtac
accgtcaccgtggcagcgaggagaggaaggcagcagagcactgcagctaccatagacgcg
ttcacaggaatcaggcctgtaacccacctctacttgtcagaggtgacctcagactcagtg
ttagtggcgtggagcgctccggcaccgcccgctgacctcttcatcctgagctacagctcc
gcagatgggaccgacacctctaaggtgacgctggacggctccaagatgaggtcacaggtc
ctggggctgcttccctccacccagtacaccgtcagtctaatcacgatacagggggatgtt
acctctgagcccattacagcatcgctcaccacaggcatggacccgccaaaagagatgacc
gtgtcagatgtgacggaagatgcggtgactatttcttggatcaaaccgctggctccattt
gaatattataagctgtcctaccaatcggccagaggccgcgtggacagcgtggtgattgac
agcgatgtgaacaactacaccttgtccagcttgttccctgccacagagtacgagatcagc
ctcaacgccgtccgggcgagtcaggagagcaaagtggtcagcacctccgtcttcacagca
atggacatgccatctgaattgacagcactcaacatcacccctcgaggaaccttgctgagg
tggaatccacctgtttccagtgtggacaactacgtgctgaccctcacatacaaccaggtg
acagctgacactttccttgtggagggaaaccggcaggagcaccagctgtccaacctcaag
ccaagcaccacctactctgtagccctctacgccaccaaaggacccctcaccagcggcacc
gtcatcaccaacatccagacgcccatggactcgcccctcaacctgacggccagtgaagtg
aatcaccgcagtgctctcatttcctggcaaccgcccatcgccgaaatcgacaactacatg
ctgacctacaggtccactgacggcagccggaaggagctgatcctggatgcggaggacaca
tggattcgcctggagggactggcagagaccgcggagttcactgtcaacctacaggctgcg
agaggccttgacaccagcgctgtggtctccaccaccttcaccacagggagtcgtctgttt
gcaacacctcagaattgtgcccagcacctgctgaacggagagacgctgagcggcgtctac
accgtttacatcaacagagacccgagccagggcgtgcaggtgtattgtgacatgaccacg
gacgaaggaggctggattgtatttcagcgtcgtcagaacggcctcacagacttttccagg
aagtggagtgactatcgggtcggctttggaaacctggaggatgaattctggctcggtctg
gacaacatccagaggattgctgctcagggccgttatgagctgagaatcgacatgaaggac
ggacaagagtcggtctacgccaattatgacaaattctccattggagatgcgaaaaatcac
tacaagctccgactcggagagtacaacggcaccgcaggtgactctctgagctaccaccag
ggccggcccttctccaccaaagacagagacaacgacatcgccgtcaccaactgcgcctcg
tcttacaaaggagcgtggtggtacaagaactgccacagggccaacctcaacggcaaatac
ggagagtccagacacagtcagggtatcaactggtaccactggaaaggccacgaattctct
attccttttgtggagatgaagatgaggccattcaacttccgtagcatcagcagcaagagg
aggcggtccgcccctgtgtaa
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integrated database retrieval system
