Pungitius pungitius (ninespine stickleback): 119209256
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Entry
119209256 CDS
T07626
Name
(RefSeq) sodium- and chloride-dependent GABA transporter 2-like
KO
K05045
solute carrier family 6 (neurotransmitter transporter, betaine/GABA) member 12
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
119209256
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ppug02000
]
119209256
Transporters [BR:
ppug02000
]
Solute carrier family (SLC)
SLC6: Sodium- and chloride-dependent neurotransmitter transporter
119209256
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Gene cluster
GFIT
Motif
Pfam:
SNF
Motif
Other DBs
NCBI-GeneID:
119209256
NCBI-ProteinID:
XP_037314332
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Position
3:3308411..3312976
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AA seq
585 aa
AA seq
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MVNKKCAPKQQRVGVEERGHWGSKAEFLLAVAGNVVGFGNVWRFPYLCYKNGGGAFLVPY
LVFVVTCGVPLFLLETTLGQYTQEGGITCWRKVCPLAEGIGYAGQLILLYSCMTYILILA
WALFYLVFSFSPQLPWSSCDNHWNTANCIDFSTQNKTLEGTNRTDTASAATEFWERRVLG
ISGGIEEMGSVRWDLLLCLIAMWVVCYFCIWKGVKSTGKVVYFTATFPYAMLLVLLIRGL
SLPGALQGVLYYLLPDPSRLTDPQVWMEAGAQILFSYSVGVGSLTVLGSYNAYENNCYKD
CLWLCLLNSGTSVVAGFAVFSVLGFMAHEQGVPIAEVAESGPGLAFIAYPQAVAMMPLPQ
LWSICFFLMLILLGLDTQFVAMEVVVTSIIDMFPAVMRRYGRRELFLLLFCLTCFLSQLV
MVTEGGMYVFQMFDYYACNGTCILFLCVFETAALGWIFGAERLCDIIEDMTGARANPFFK
FSWLYLTPLVLLVSFICSLVEYQPLTFNRRYVYPAWAYTCGWVMTFSSILLVPGWVLYKL
AIGTGSLSQRFHHLCQPATDCSVTQRRETELQHLGEEVEHGFASG
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
atggtgaataaaaaatgtgccccaaaacagcagcgcgtgggagtggaggagcgcggacac
tggggcagcaaggccgagttcctcctggcggtggcgggaaacgtcgtcggcttcggcaac
gtgtggcggttcccttacctctgctacaaaaacggaggaggtgcgttcctggtgccctac
ctggtgttcgtggtgacctgcggcgtccctctgttcctgctggagacgacgttgggccag
tacacccaggaggggggcatcacctgctggaggaaggtgtgccccctggccgaaggtatc
ggctacgctgggcagctcatcctcctctacagctgtatgacctacatcctaattctggcc
tgggctttgttctacttggtgttctccttcagccctcagctcccctggtccagctgcgac
aaccactggaacacagccaactgcattgacttctcaacccaaaataaaaccctcgagggg
accaaccggaccgacacagcctccgctgccacagagttctgggaacgacgggtgcttggc
atctcgggggggatcgaggagatgggcagcgtcaggtgggatctgctgctgtgcctcatt
gcaatgtgggtcgtctgctacttctgcatctggaaaggggtcaagtccacgggaaaggtg
gtgtatttcaccgccaccttcccgtacgccatgctgctcgttcttctgatccgcggactc
tctcttcccggggctctgcaaggagtcctctattacctcctgccggatccctcgaggctc
acggaccctcaggtttggatggaggccggggctcagatcctcttctcatacagcgtgggc
gtgggctccttgaccgtgttgggcagctacaacgcctacgagaacaactgctacaaggac
tgcctgtggctgtgtttgctgaacagcggcaccagcgtcgtcgccgggttcgcggtcttc
tccgtgctgggattcatggcccacgagcagggcgtccccatcgcagaggtggccgagtca
ggccctggcttggctttcattgcgtaccctcaggccgtggccatgatgcctctgccccaa
ctgtggtccatctgcttcttcctcatgctcatcctcctgggcctggacacgcagtttgtg
gccatggaggtggtggtgacgtccatcatcgatatgtttcccgcggtaatgcgcaggtat
ggccggcgggagctcttcctcctcctcttctgcctcacctgcttcctctctcaactcgtc
atggtcaccgagggaggaatgtacgtgttccagatgtttgactactacgcctgcaacgga
acctgcatcctcttcctctgcgtgtttgaaaccgcggcactcgggtggatatttggggcg
gagcggctgtgcgacatcatcgaggacatgacaggggcgcgcgccaacccgttcttcaaa
ttcagctggctttacctcacccctctggtcttactggtatcttttatatgttctttggtg
gagtaccagcctctgacctttaaccgccggtacgtgtacccggcgtgggcgtacacctgc
ggctgggtgatgaccttctcctccatcctgcttgtgccgggatgggtgctgtacaaactg
gcgattgggaccgggagcctcagtcagcgtttccatcacctgtgccagccggccaccgac
tgctccgtgacccagaggagagaaactgagctgcaacacttgggggaggaggttgaacac
ggcttcgcctccggctga
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