Pungitius pungitius (ninespine stickleback): 119209346
Help
Entry
119209346 CDS
T07626
Symbol
wdr33
Name
(RefSeq) pre-mRNA 3' end processing protein WDR33 isoform X1
KO
K15542
polyadenylation factor subunit 2
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119209346 (wdr33)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppug03019
]
119209346 (wdr33)
Messenger RNA biogenesis [BR:
ppug03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
119209346 (wdr33)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
WD40
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_IFT122_1st
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EML_2
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
Beta-prop_EML
Beta-prop_CAF1B_HIR1
WDR55
WD40_Gbeta
EIF3I
Beta-prop_IFT140_1st
Beta-prop_Aladin
Beta-prop_TEP1_2nd
ASA1
Beta-prop_WDR36-Utp21_2nd
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR19_1st
DSE1_N
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_RIG_2nd
Beta-prop_EIPR1
CFAP251_N
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
Beta-prop_Vps41
eIF2A
WD40_RFWD3
Beta-prop_NOL10_N
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
Beta-prop_WDR35_TULP_N
Beta-prop_HPS5
Beta-prop_DCAF4
Beta-prop_WDR11_2nd
Beta-prop_WDR41
Ge1_WD40
PEP5_VPS11_N
Motif
Other DBs
NCBI-GeneID:
119209346
NCBI-ProteinID:
XP_037314503
LinkDB
All DBs
Position
15:complement(1919380..1929061)
Genome browser
AA seq
1055 aa
AA seq
DB search
MATDIGSPQRFFHMPRFQHQAPRQVFYKRPDFAQQQAMQQLTFDGKRMRKAVNRKTIDYN
PSVIRHLENRLWQRDHRDFRALQPDAGCYNELVPPVGMCNNPMNAVTTKFVRTSTNKVKC
PVFVIRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTAD
HGGYVKYWQSNMNNVKMFQAHKEAIREASFSPTDNKFATCSDDGTVRIWDFMRCHEERIL
RGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQSLATLHAHKNTVMEVKWNLNG
NWLLTASRDHLCKLFDIRNLKEELQVFRGHKKEATAVAWHPVHEGLFASGGSDGSLLFWH
TGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHTSKFWTRNRPGDKMRDRYNLNLL
PGMSEDGMEYDDVDLNSVASIPGMGIPEQLKAAMEQEQSSKEAAPEVEMSIPGLDWGMDE
VMGKDAKKVPQKKVPYAKPIPAQFQQAWAENKVPMMPPGGELSKDRKVEQKADGKKKSQA
ELEQEMASLQYTNPMLLEQMKMDRMNTDGNMGPPQGQGPMPPFPPPPGQQSFPPNMPPQQ
MPNNMGPPMGPGGMQPPFMPPGPMGPPSGPQSHQGPMMGPPDMQGPQGMQRHPGPPRNMG
PQGPHGMGPRGMQGPHGGMMGPPPRGMGPRDPQGPPPQGGMMGPQGGMMGPPPRTHGNGP
NNYGMGSMQGPPGGLHGPPGNMQVPHGNMQGPQGNMQGPHGSMQGPPYMQHQNSGPMMHG
MGQQGPNSKDPRGPPPNHHMGPSDRQGPAGSDQGGSGAYWGENQQGRRGPQDFDGGQDFH
GRGEEGWRPGPGYQGGGGGGHRGGGHRGGGGNVGSWGPEERFAGGDFRGRRDDRFRGGGP
GRPAGRGYQEEYGGQEEGYEGPEELGRGWDNGGRGRPPRGGGPPRGGHDGYRDGQQMHDG
SSPAGRERSASLQGMDMASLPPRKRPWQDGPGTGDPRERESPGAEGGRPPPREDGGYGPS
NRGGRGGWGPGGPGPLPRRGGPAPRGPPRGGGRGR
NT seq
3168 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggacatcggatcgccgcagcggttcttccacatgccgcgcttccagcaccag
gcaccgcggcaggtgttctacaagcggccggacttcgcccagcagcaggccatgcagcag
ctcacattcgacgggaagcgcatgagaaaggctgtgaaccgaaaaaccatcgactacaac
ccgtccgtcatccgacacctggagaatcgtttgtggcagcgcgaccatcgagacttcaga
gccctgcagccggatgccgggtgttacaacgaactggttcctcccgttgggatgtgtaac
aacccgatgaacgccgtcaccaccaagtttgtccgaacctccaccaacaaagtcaagtgt
cccgtgttcgtgatcaggtggacccctgaaggtcgtcgtctcgtcactggcgcctccagt
ggagagttcacactgtggaatggactcaccttcaacttcgagaccattttacaggcccac
gacagtcctgtccgggccatgacgtggtctcataacgacatgtggatgctgacggcggac
cacggcggctacgtgaagtactggcagtccaacatgaacaacgtcaagatgttccaggct
cacaaggaggccattagagaagccagtttttctccaacagataataaatttgccacctgc
tcagacgacggcacggttcggatctgggacttcatgcgctgccacgaggagagaatcctc
cgaggtcacggagctgacgtgaagtgtgtggattggcatcccaccaaaggcctggtggtc
tccggcagcaaagacagccagcagccaatcaagttctgggacccgaagacgggacagagt
ctggccacgctccacgcccacaagaacacagtgatggaggtgaagtggaacctcaatggc
aactggctgctgacggcgtcacgtgaccacctgtgtaagctgtttgacatccgaaacctg
aaggaggagctgcaggtgttcagaggacacaagaaggaggcgacagctgtggcctggcat
cccgtccatgaaggtctgtttgccagcgggggctctgacggctctctgctcttctggcac
acgggggtggagaaggaggttggagggatggagatggcccacgaggggatgatctggagt
ctggcctggcacccgctgggtcacatcctgtgctcaggctccaacgaccacaccagtaag
ttctggacgaggaaccgccccggtgataagatgagggaccggtacaacctgaacctgctg
cccggcatgtcagaggacggcatggagtacgacgacgtggacctgaacagcgtggcctcc
atccctggcatggggatccccgagcagctcaaagccgccatggagcaggagcagagcagt
aaagaggcggcccccgaagtggagatgtccatcccgggtcttgactggggcatggacgag
gtcatgggtaaagacgccaagaaggtcccgcagaagaaggtgccgtacgccaaaccgatc
ccggcgcagttccaacaggcctgggcagagaacaaagttcccatgatgccgcccggcgga
gagctgtccaaagaccggaaggtggagcagaaagcggacggcaaaaagaagagccaggcg
gagctggagcaggagatggcgtctctgcagtacaccaaccccatgctgctggagcagatg
aagatggaccggatgaacacagatgggaatatggggcccccgcagggacagggcccaatg
ccccctttccccccccctcccggccagcagagctttcccccaaacatgccgcctcagcag
atgcccaacaacatggggcccccaatgggccccgggggcatgcagcctcctttcatgccc
cctggaccgatggggccaccctctggacctcagtctcaccaggggcccatgatgggaccc
ccggacatgcaaggaccccaaggtatgcagagacacccaggtccgccaagaaatatgggc
ccccaagggcctcacggtatgggacccagagggatgcaggggccccatggtggcatgatg
ggcccccctcctcgaggaatgggtccaagggatcctcaaggtcccccacctcaggggggc
atgatgggcccgcagggtgggatgatggggcccccacccaggacacacggcaacgggcca
aacaactacgggatgggcagcatgcaggggccaccgggaggtttgcatggccccccagga
aatatgcaagtaccacatggaaacatgcaggggccacaaggtaacatgcaaggaccgcat
ggaagcatgcaggggcccccgtacatgcagcaccagaactcggggcccatgatgcacggg
atggggcagcaggggcccaacagcaaagaccctcgggggccgccgcccaaccaccacatg
ggcccctcagaccggcaggggccggcggggtcggaccaggggggctcaggtgcttactgg
ggggaaaaccagcagggtcgacgtggcccgcaggactttgacggcggccaggacttccac
ggcagaggagaggagggctggagacctggaccgggataccagggtggaggaggaggggga
cacagggggggaggacaccgaggagggggggggaacgtagggagctggggccccgaggag
cggttcgccgggggagatttcagaggacggagggacgatcggttccgaggaggaggcccc
ggtcggcccgctggccgaggctaccaggaggagtacgggggccaggaggagggctacgag
ggcccggaggagttgggtagaggctgggacaacggaggccgagggaggccgccgagagga
ggcggtccaccaagaggaggtcatgatggctatcgggatggtcagcagatgcatgatggg
tcgtctccggctggccgtgagcgctctgcctccctccaggggatggacatggcgtctctg
ccccccagaaagcgtccctggcaggacggaccaggaacaggagatccacgagagcgagag
tccccgggagccgagggagggcgcccccccccgagggaggacgggggctacggcccgtct
aatcgaggtggacgaggcggatggggtcctggaggacctggaccgttgcctaggagggga
ggaccagcacccagaggaccaccgagggggggcggccggggccggtag
DBGET
integrated database retrieval system
