Pungitius pungitius (ninespine stickleback): 119209461
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Entry
119209461 CDS
T07626
Symbol
smg7
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7 isoform X1
KO
K14409
protein SMG7
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119209461 (smg7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppug03019
]
119209461 (smg7)
Messenger RNA biogenesis [BR:
ppug03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
119209461 (smg7)
mRNA cycle factors
Common to processing body (P body) and stress granule
119209461 (smg7)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
Motif
Other DBs
NCBI-GeneID:
119209461
NCBI-ProteinID:
XP_037314737
LinkDB
All DBs
Position
15:1784006..1795424
Genome browser
AA seq
1173 aa
AA seq
DB search
MNVCAQYLRQAEALKADMTDSKLGAAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDLW
NHAFKNQITTLQSQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRV
KSSQLGIISNKQGGGAIVTPQPSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLV
PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVKT
KWSVSDFVRAFIKFHGHVYLSKSLEKLDLLREKLEEQFQRLTLQKAFSSQQLVHITVINL
FELHHLRDLTAEGEEQIFSGEQQVGWFQLLGLFMSFLGVMCSRVILNNSRGEEILGECPL
PAIKVSLDWLKLRPSIFPEAAVDQRQHVWPWLVSILNSFQPREDNVSCSLVTPLPEEFEL
QGFLALRPALRSLDFTKGHQGVLVDRDGLPVHTRHQRLISLGRWVADNQPGLIQCKVSED
GLLVFITDIPEQAVEEPLEKEAPVLQESSNAEQTANDGGNCGLKSVLSAGKTQSSWPDGS
ERPVVTFKENIKPREQSREPTRSHPLKDSGKERRDFAKGNGAAGKGELKRDGKRKSELKK
AGHEKAADAVKQVKAQTEMRKTPVSEAKKTPVTQTQTTCSSQFIPTLHHPGAFPPLPSRP
GFPPSAYVIPPPVAFPGLQVNPGFTFPAGVSVPGAFLQPGVHAQSAGQAGKPSHIPYSQQ
RPSGPGPAQGPGSSGPPQGQQPQNQAMQSVQLQAMSQQSPTKPVQQVGMGKSPPHHPGLQ
QFMQVQDQPAQMWNQAQAALQKIPPMPMSMKQPQQQAAFYMAAQDPLKLYEHQMDKKMKF
PNVKMQDFYWEPTYRMGEGLAVMADRMKRPPPGGICPEQDGSTGPRGPQFEDNKPLLPPD
LLKTLADLEEEEELVFSKPPDFFQALAGPLSSAPGPNIFLPNQSRMESVPESGSSSLLPM
SGFPMQVRPVDPHAQEYNQNSIFSQAYGKNLPPSSKPDAPMMHQEPSLYSLFEGTPWSPS
LPASSDHSTPASQSPHSSNPSSLPSSPPTHNHGAVPFSNFGPIGTPDSRDRRMLDRWKAD
KTGAVSGFGLDYLPAAASSAASDTSWHQAGPTGNSWTNQESPMEESSSTVLLDSLKSIWS
SSMMQPGPSALEQLLLQQKQKQQRGHGAMNPPH
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgaacgtgtgcgctcagtatctccgacaggcagaggccctgaaggctgacatgacagat
tcaaagctgggggcggcggaggtgtggacgtcccgacaggccctgcaggatctgtatcag
aagatgctggtgacggaccttgagtacgctctggacaagaaggtggagcaagacctgtgg
aatcacgcctttaagaaccagatcaccacgctgcagagccaggccaagaaccgagccaac
cccaaccgcagcgaggtacaggccaacctgtcgctgttcctggaggcagcgagtggcttc
tacacacagctgctacaggagctgtgcaccgtcttcaacgtggaccttccgtgccgcgtc
aagtcgtctcagctcggcatcatcagcaataaacagggcggcggcgccatcgtcacgccg
caacccagctcctgctcctacatctgccagcactgccttgtccacctgggagacatcgct
cgttaccgtaaccagaccagccaggcggagtcgtactaccgacacgccgctcagctggtg
ccgtccaacggtcagccctacaaccagctggccatcctggcctcctccaaaggagaccac
ctcaccaccatcttctactactgccgcagcatcgcggtcaagttccccttcccggccgcc
tccaccaacctgcagaaggctctgtccaaggctctggagagccgtgacgaggtgaagacc
aagtggagcgtgtctgacttcgttcgggccttcatcaagttccacggccacgtttacctg
agcaagagtctggagaagctggacctcctgagggagaagctggaggagcagtttcagagg
ctgaccctgcagaaggccttcagctcccagcagctggtccacatcaccgtcatcaacctg
ttcgagctccaccacctcagggacctgacggctgaaggcgaggagcagatcttcagcggc
gagcagcaggtcggctggttccagctgctgggcctcttcatgtccttcctgggagtcatg
tgcagtcgcgtcatactcaacaacagccgcggggaggagatcctgggcgagtgccctctg
ccggccatcaaggtttctctggactggctgaagctgagacccagcatcttccccgaggcc
gccgtggaccagaggcagcatgtttggccctggctggtctccatcctcaacagtttccag
cccagagaggacaacgtgtcctgctccttggtgacgccgcttccagaggagtttgagttg
cagggtttcctggctctacggcccgctctgaggtccttggacttcaccaaagggcatcag
ggcgtcctggtggacagggatggtctgccggtccacacccgacatcagagactcatcagt
ttgggcagatgggtcgctgataaccagccgggcctgatccagtgcaaggtgagcgaagac
ggcctcctcgtcttcatcaccgacattccggagcaggccgtcgaggagcccctggagaag
gaggcgccggtgctgcaggagtcgtccaacgccgagcagacggccaacgacggcggcaac
tgcggcctgaagtcggtgctgtcggcggggaagacgcagagctcgtggcccgacggcagc
gagcgacccgtcgtcaccttcaaggagaacatcaagcccagggagcagagccgagagccc
acgcgcagccatcccctgaaggacagcggcaaggagcgccgggacttcgccaagggcaac
ggcgccgccggaaaaggggagctgaagagggacgggaagaggaagagcgagctgaaaaag
gccggacacgagaaagccgccgacgccgtaaaacaggtgaaggcacagacggagatgagg
aagactccggtctctgaggccaagaagacacccgtcactcaaacgcagaccacctgctcc
tcccagttcatccccaccctccatcacccaggagccttcccccctctgcccagccgacca
ggtttcccaccctcggcgtatgtgatcccccccccggtggcctttccaggcctccaggtg
aacccgggcttcaccttccctgctggcgtgagcgtccccggcgccttcctccagccgggc
gtccacgcgcagagcgccgggcaggccgggaagccgtcccacattccctacagtcagcag
aggccctctggccccggtccggctcagggcccggggtcctcgggccccccccaaggtcag
cagccccagaaccaggccatgcagtcagtccagctgcaggcgatgagccagcagtctccc
accaaaccggtccagcaggtcgggatgggcaagagtccacctcaccacccgggtctgcag
cagttcatgcaggtccaggatcagccggctcagatgtggaaccaggctcaggccgctctg
cagaagatcccccccatgcccatgtccatgaagcagcctcagcagcaggcggccttctac
atggcagctcaggatcctctcaaactctacgagcaccagatggacaagaagatgaagttc
cccaacgtgaagatgcaggacttctactgggagcccacctacaggatgggggagggtttg
gctgtcatggccgacaggatgaagaggcctccccctggggggatctgccccgagcaggac
ggctccactgggccccggggccctcagtttgaggacaacaagcctcttctacctcctgac
ctgttaaaaactctagcagatcttgaggaggaggaggagctggtcttttctaagcctcct
gatttcttccaggccttggccggccctcttagctctgctcctggaccaaacatatttctg
ccaaaccagagccggatggagagcgtccccgagagcggctcctcgtctctgctgcccatg
tccggcttccccatgcaggtccgacccgtcgacccacacgcgcaggagtacaaccagaac
agcatcttcagccaggcctacggcaagaacctgcctcccagctccaagcccgacgctccc
atgatgcaccaggagccgtccctgtactctctgttcgaggggaccccctggtccccctcc
ctgcccgccagctccgatcactctaccccagccagccaatcccctcactcctccaacccc
agcagcctgccgtcttccccccccacacacaatcacggcgccgtgcccttctccaacttt
ggccccatcggcactccagacagccgggaccgcaggatgctggaccgctggaaggccgac
aagaccggggcagtcagcgggttcggactggactacctgccggccgcggcctcctctgca
gcttcagacaccagctggcaccaggccggtcccaccggcaactcctggaccaatcaggag
tctccgatggaggagtcgtcctccaccgtgctgctcgacagcctgaagtccatctggtcg
agctccatgatgcagccgggcccgtcggcgctggagcagctcctcctgcagcagaagcag
aagcagcagcgaggtcacggcgccatgaacccgcctcactga
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integrated database retrieval system
