KEGG   Pungitius pungitius (ninespine stickleback): 119209836
Entry
119209836         CDS       T07626                                 
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
ppug  Pungitius pungitius (ninespine stickleback)
Pathway
ppug04115  p53 signaling pathway
ppug04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:ppug00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    119209836
 09140 Cellular Processes
  09143 Cell growth and death
   04115 p53 signaling pathway
    119209836
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ppug04121]
    119209836
Enzymes [BR:ppug01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     119209836
Ubiquitin system [BR:ppug04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    119209836
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     119209836
SSDB
Motif
Pfam: WD40 WD40_CDC20-Fz WD40_Prp19 Beta-prop_TEP1_2nd WD40_WDHD1_1st Beta-prop_EML_2 WDR55 Beta-prop_EIPR1 Beta-prop_RIG_2nd zf-C3HC4_2 EIF3I Beta-prop_TEP1_C Beta-prop_WDR19_1st zf-C3HC4 WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 zf-RING_2 Beta-prop_EML Beta-prop_DCAF4 zf-RING_UBOX zf-C3HC4_4 Beta-prop_WDR90_POC16_2nd zf-C3HC4_3 zf-RING_5 RING_XB3-XBAT31 WD40_RFWD3 Beta-prop_WDR35_TULP_N WD40_like Beta-prop_Vps41 Beta-prop_IFT140_1st Beta-prop_DCAF12 Beta-prop_IFT122_1st Beta-prop_NUP159_NUP214 zf-rbx1 zf-RING_10 WDR90_beta-prop_4th Sina_RING UvrD-helicase zf_C2H2_10
Other DBs
NCBI-GeneID: 119209836
NCBI-ProteinID: XP_037315334
LinkDB
Position
15:complement(15933922..15944586)
AA seq 709 aa
MMSNNRPQQSAGGASPVPSTSNVSGSAGGTGSTNGGGGTNGNNSGNVVPSRTPTGTSEGG
LSVPSLAAVPASRGGFASLSRPTASSGSRKKSLHQAPLYNGLLNSYEDKSNDFVCPICFE
MIEEAHMTKCGHSFCFKCIRQSLEDSNRCPKCNYIVDNVDQLYPNFLVNELILKQKQRSE
EKRLKLDHPNGSRWQVFQDVLSPDQENLDLANVNLMLELLVQKKKQLEAESQAAQRQILM
EFLKEARRNKREQLEQLQKELSFLEEDIKRVEEMSGLYSSMMEAECTVPNVEAPSPAPSC
SSIMETPDYSQPPGFGGTTQLKRQTWYNSTLASRRKRLTAHFEDLEQCYFSNKMSRITDE
GRNLNQLDDFMECLSKFTRYNSVRPLATLSYASDLYNGSSIVSSIEFDRDCDYFAIAGVT
KKIKVFEYGTVIQDAVDIHYPVNEMTCNSKISCISWSSYHKNLLASSDYEGTVILWDGFT
GQRSKVYQEHEKRCWSVDFNLMDPKLLASGSDDAKVKLWSTNLDNSVASIEAKANVCCVK
FSPTSRYHLAFGCADHCVHYYDLRNTKQPIMVFKGHRKAVSYAKFVNGEEIVSASTDSQL
KLWNVNKPHCLRSFKGHINEKNFVGLASNGDYVACGSENNSLYLYYKGLSKTLLTFKFDT
VKSVLDKDKKEDDTNEFVSAVCWRALPDGESNVLIAANSQGTIKVLELV
NT seq 2130 nt   +upstreamnt  +downstreamnt
atgatgtcaaacaaccggccacagcaaagcgccgggggggcgagtccggtgcccagcaca
agtaacgtcagcggcagcgcaggaggcaccgggagcacaaacggtggcggcgggaccaac
ggtaacaactctggaaatgttgtgccctctcggaccccgacagggaccagcgaggggggc
ttgtcggtgccgtcgttggccgccgtgccggcgtcgcggggcggcttcgcgtctctcagc
cgacccacggcgtcctcgggcagcaggaagaaatccctccaccaagcacccctttacaac
ggcctcctgaactcctacgaagataaaagcaacgactttgtctgtcccatttgcttcgaa
atgatagaagaggcccacatgacaaagtgtggacacagtttttgtttcaagtgtatccgc
cagagtctggaggacagcaaccgatgcccgaagtgtaactacattgtcgacaacgtggat
cagctctaccccaactttcttgtaaatgaactgatcctcaaacagaagcaacggtccgaa
gagaaaaggctcaaactggatcatcctaatgggtcaaggtggcaggtgttccaggacgtg
ttgagtcccgaccaggagaacttggacctagctaatgtcaatctgatgctggagctgctg
gtccagaagaagaagcagctggaggcggagtcccaagcagctcagagacagatactcatg
gagttcctgaaagaagccaggagaaacaagagagagcaactggagcaactgcagaaagag
ctcagctttcttgaagaggacattaagcgcgtggaggagatgagcgggctttactcttcc
atgatggaggctgagtgtacggtgcctaatgttgaggctccctcaccagcacccagctgc
agcagtattatggagacgccagactacagccagcctccaggttttggtggaacaacccag
ctcaaaagacagacctggtacaacagcaccctggcgtcgaggaggaagaggctcacggct
cattttgaggatctggagcagtgctacttctccaacaaaatgtcccgcataacagatgaa
ggcaggaacttgaaccagctggatgatttcatggagtgtctgtctaagtttacccgctac
aactctgtgcggccacttgccaccctctcgtacgccagtgacctctacaacggctccagc
atcgtctccagtattgagtttgaccgtgactgcgactactttgccattgctggtgtgacc
aagaagatcaaggtgtttgagtacggcacagtgatccaggacgcggtggacatccactac
cccgtgaatgaaatgacatgcaattccaaaatcagctgtatcagctggagcagctaccac
aagaaccttctggccagcagtgattacgagggtacggtcatcctgtgggacgggttcacc
ggccagaggtccaaagtctaccaggagcatgaaaaaaggtgttggagtgtcgacttcaat
ctaatggacccaaagctgttggcctccggttctgatgatgcgaaagtgaagctgtggtcg
actaatcttgataactcggtggccagcatcgaggccaaagccaatgtctgctgtgtgaaa
ttcagcccgacctccaggtaccatctggcctttggctgtgcagaccactgtgtccactac
tatgatctccgcaacactaagcagcccatcatggtgttcaaaggccacaggaaggctgtg
tcctacgccaagtttgtcaacggagaggagatagtttctgcttccacggacagtcagctg
aagctttggaatgtcaacaaaccgcactgcttgcgctctttcaagggtcacatcaatgag
aagaactttgtgggcctggcctccaatggagactatgtggcctgtggcagtgaaaacaac
tccctgtacttatactacaaagggctgtccaagacattgttaacattcaagttcgacaca
gtgaagagcgtcctggacaaagacaagaaggaggacgacaccaatgagtttgtcagcgcg
gtctgctggagagcgctgcccgacggagagtcaaatgtcttgattgctgcaaacagtcaa
ggaacaatcaaggttcttgaactcgtctga

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