Pungitius pungitius (ninespine stickleback): 119209920
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Entry
119209920 CDS
T07626
Symbol
hfm1
Name
(RefSeq) probable ATP-dependent DNA helicase HFM1
KO
K15271
ATP-dependent DNA helicase HFM1/MER3 [EC:
5.6.2.4
]
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ppug03036
]
119209920 (hfm1)
Enzymes [BR:
ppug01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
119209920 (hfm1)
Chromosome and associated proteins [BR:
ppug03036
]
Eukaryotic type
Meiosis-specific proteins
Others
119209920 (hfm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
ResIII
Helicase_C
DEXQc_Suv3
Motif
Other DBs
NCBI-GeneID:
119209920
NCBI-ProteinID:
XP_037315462
LinkDB
All DBs
Position
15:8654454..8668250
Genome browser
AA seq
1536 aa
AA seq
DB search
MLDTDDCTLSLDNLFFEKPVVHKVKPLHQEVSKWQLEVPPSLSQVPATQELQKEAESFSP
QYSFSQGFNRFLPPSKGSDSLMVLPSKINSPYSYNNDEKEIEMTQSGGNSTSTSFWGGNG
FRDYSRGSCQSGRSSDETPQHSGHPVISRRSLSQEQSKSPPLRKSLFKVQMLNTGGDSSN
VDDLKSSSSSQSQTASRPQTFLSAVAMVTVPPLQAPRATVNQAASLLSPKPPFPPPPSCS
SAARGRPPHTTANAEMQDNGTKRAFVPPMTPQPLCIEGSSGMGVLRPVSEIPAKFRSVFN
EFPFFNYVQSKALDEVLYTSKNFVACAPTGSGKTVLFELAIIRLLMESSEPWKDVKAVYM
APIKALCSQCFESWKKKFGPLGLTCKELTGDTEIDDFFEIQDSHIILTTPEKWDSMTRKW
KDNCMLQLVRLFLIDEVHVVKDATRGATLEVVVSRMKAVHAYRTAQNPETGLSMRFVAVS
ATIPNTSDIADWLSDERGPATYLDMDESYRPVKLRKVVLGFPSTPNQTEFKFDLLLNYKM
SNIIQTYSDQKPALVFCSTRKGVQQAATVLAKDARFMMSIEHKQRLTKYANSILDSKLRD
LLVLGVGYHHAGVDLSDRKLIEEAFTQGDLPVLFTTRTLAMGVNLPAHLVVIKSTMQYVA
GSCEEYSEADLLQMIGRAGRPQFDTSATAVIMTKIQTKDKYMKLMNGVEIIESSLHSHLV
EHLNAEIVLQTIRDVNMALDWIRSTFLYIRALKNPTHYGFPASLDRYGIEAKLQELCLKN
LNSLSSIGLIDMDEEINIKPTEGGRLMARYCVAFDTMTQFSKATGTESLSDLIELVSKSR
EFSDIQLRMNEKRTLNTFNRDKNRITIRFPIQGKIKTSEMKVNCLIQAQLGSISIQEFGL
TQDTAKIFRNGMRISKCLSEFLSHRSRIGFSAVLNSLILAKCFRAKLWENSFYVSKQLEK
IGQTLSTAMVNAGLTTFSKIEQINARELELIVNRHPPFGNQIKESATNLPKYEVTLEQLP
RYSCATAEIVVKVNLKNQAQLLSRRTAPDDHYISLIIGNSDNAVVFLQKLTDLVLLKCGS
WSKKIEVAKASKGEEISVNLISSQYVGLDIQHKFNVYYSGARRFGNEIPSNTPFDPTGQR
PQHAALKPHSTDQAAGHRESATSATDQDLSNKRQCNHYCKNKDLCGHDCCKVGVAVARKR
SANQESSFSSYLKDLRNRCDTLPQTPVKRLKMKISEESVSVDMQEFAYKPKERLPTTSWY
EGSHWEGPHVDIVDLTGDQIEPDIVHLNHVDSNYEDYVEDTAGMMEEPVKASQAPHQIIV
KKSSSAWMNPGVSVCHNQKPLLSRIQTTSSAAVTNQGAPCVNASSPQIPTVSFDLGNEWD
DFDDENLVNASEMPLALCQPEVQQCVGYNMPGLAASSALVLLSHSQVKPCVTTARMPLRS
VLPEVREQGPSLVTVRPLNRSTFGWNEKRSSPFREEITVKAPKFLQKQTEAHVATVPRGF
DFFSTVSVPSNTSSAVSRSIKCKEEEAFLGIFDGIF
NT seq
4611 nt
NT seq
+upstream
nt +downstream
nt
atgttggacactgatgactgcaccttgtccttggacaatctattttttgagaaacccgtt
gtccacaaagtaaagccactgcaccaggaggtcagcaaatggcagctggaagtgcctcca
tccctttctcaagttccagccacgcaggaattgcagaaggaggcagagtctttttctccc
caatacagtttctcacagggattcaatagattcctgcctccttccaaaggatcagattct
cttatggttttaccatcaaagatcaatagcccctactcttataacaatgacgagaaagag
attgagatgactcaaagtggcggcaatagcaccagcaccagcttttggggaggtaacggg
tttcgggattactcccgaggttcctgtcagagtggcagaagtagtgatgaaaccccgcag
cactctggtcatccagtcatcagcagaaggtcgttgtctcaggagcaaagcaaaagccca
cctctacggaaaagtttgttcaaggttcagatgttgaacactggaggtgactcgtcaaac
gtagacgacctcaaaagcagcagcagcagtcaaagccagacagcatccagacctcaaact
tttctcagcgcggttgccatggtgacagtgcctcctcttcaggcgccacgggcgacagtt
aaccaggcagcttctcttctgtcccccaagccccccttcccaccccctccttcttgctca
tctgcagcgaggggccgaccgccgcacacaacggcaaatgctgagatgcaggacaacggc
acaaagagagccttcgttccacccatgacgcctcagccgctttgcatagaaggttcctct
gggatgggggtgttgagaccagtctctgaaatcccagctaagttcagatctgtcttcaat
gagtttccctttttcaactatgttcagtccaaagctctggatgaagttctttacacaagt
aagaactttgttgcatgtgctcctactggatctggtaaaacagtgctgtttgagctggca
atcattcgtcttttaatggagtcatcagagccctggaaagatgtcaaagctgtctatatg
gcccccatcaaggctctctgcagtcagtgctttgagagctggaagaagaagtttggtcct
ctggggctgacctgtaaggagctgacgggagacacagagatcgatgacttctttgagatt
caggactcccacatcatcctcacaacgcctgaaaaatgggacagcatgacaagaaaatgg
aaggataattgtatgctgcagctagtcaggctcttccttatcgatgaggtgcacgtggtg
aaggatgcgactcgtggtgccacactggaagttgtagtgagcaggatgaaggctgtgcac
gcatacagaacagcacagaatccagagactggcctctctatgaggtttgtggctgtatca
gccaccataccaaacacctctgacatagcagactggctgtctgatgagagaggtcctgcc
acataccttgacatggacgagagctaccgtcccgtgaagctgaggaaggtggtgctggga
ttcccctcgaccccaaaccagacagagtttaagtttgaccttttgctcaattacaagatg
tccaacatcatacaaacgtactctgaccagaagcctgcactagtgttttgctctacacgg
aaaggagtccagcaggcagctacagttctggccaaggatgctcggtttatgatgagcatt
gagcacaagcagaggctgacgaaatatgcaaactctattctggattcaaaactgagagat
ctgttggtgttaggagtcggttaccaccacgcaggagttgacttgtcggataggaagttg
atagaagaggccttcactcagggagacctgcctgtcctcttcaccaccaggaccctggcc
atgggggtgaacctgccagctcatctggtagtgatcaagtctaccatgcagtatgtggca
ggatcctgtgaggagtacagcgaagctgacttactgcagatgattggccgagctggaaga
ccacaatttgacacctcagcgactgcagtgatcatgaccaagatccaaaccaaagacaag
tacatgaaacttatgaatggggtggagattattgagagcagcttacacagtcacctggtg
gagcacctgaatgctgagattgttcttcaaaccatcagggatgtcaacatggctttggac
tggatacgctccaccttcctgtacatccgagccctgaagaaccccacacactatggtttt
cccgcaagcttggacagatatggaatcgaagcaaaactgcaagaactgtgtctgaagaac
ctcaactctctgtcctccattggtctgatcgacatggatgaggaaatcaacatcaaacca
acagaaggcggcagattgatggccaggtattgtgttgcattcgacaccatgacacagttc
agcaaagcgaccggcaccgagagcctttctgacctgattgagttggtgtcgaagagcaga
gagttcagcgacattcagttgagaatgaacgagaagaggaccctgaacaccttcaacagg
gacaagaacaggatcactatcaggtttcccattcagggaaaaatcaaaaccagtgagatg
aaagtgaactgcttgattcaggctcagttgggatccatctctattcaagagtttggactt
acacaggacacggccaagatctttaggaacgggatgcgcatcagcaaatgcttgtcagag
tttctgagtcaccgttctcggattggtttctccgcggtgcttaactccctgatcctggcc
aagtgcttcagagccaagctttgggaaaactcgttctatgtttccaaacagctggaaaag
ataggccagacgctgtcgacggccatggtgaacgctggactcaccactttcagtaaaata
gagcaaatcaacgccagagagcttgagctgattgtcaacagacatccaccatttgggaac
caaatcaaagaatctgccacaaatctcccaaagtatgaagtaactttggagcagcttccg
aggtatagctgtgctacggcagagattgtggtgaaggtaaacctcaaaaatcaagctcag
ctgctgtccaggagaacggctcctgacgaccactatatctctctgattatcggaaactct
gacaacgctgtggtcttcttacagaaactcacggatttggtcctgctgaagtgtggcagc
tggtcaaagaagattgaggtggcaaaggcctcgaaaggagaggagatcagtgtcaatctc
atcagctcacaatatgtgggcctggacatccagcacaagttcaacgtctactactctgga
gccagaaggtttggaaatgaaattccttccaacacaccctttgatccgacaggacagaga
cctcagcacgctgcactgaaaccacattctacagatcaggctgcgggtcacagggaaagt
gccacatctgctacagaccaagatttaagcaataagagacaatgcaaccactactgcaag
aataaggatctctgtggccacgactgctgtaaagtaggtgtggctgtggcaaggaagagg
tcagcaaatcaggagtccagtttctcttcctatttgaaagacttaaggaacagatgtgac
acccttccacagactcctgtcaaacggctgaagatgaaaattagtgaggaatctgtttct
gttgacatgcaggagtttgcctacaaacccaaagagaggctacctacaacttcctggtac
gaaggaagtcactgggaaggaccacatgttgacattgtggatctgacaggagaccagata
gagcctgacatcgtccatctgaaccatgttgacagtaattatgaagactacgttgaggac
accgccgggatgatggaggagcctgtaaaggcatctcaagctccacatcagattattgtt
aaaaaatcttcttccgcgtggatgaacccaggagtcagtgtttgccacaaccagaaaccg
cttctaagccggatccaaacaaccagctcggctgccgtgacaaaccagggcgctccctgc
gtaaatgcttcttccccacaaataccgacggtcagctttgaccttggaaacgagtgggac
gactttgatgacgagaacttggtgaatgccagcgagatgccattggccttgtgtcaacct
gaagtccagcagtgtgtcggctacaacatgccaggccttgctgcttcatctgcgctggtg
ctcctcagtcactcacaagtcaaaccctgtgtgaccacagccagaatgccactgaggtcg
gttttgcctgaagtcagagaacaaggaccctcactggttacagtcagacctctgaacaga
agcacatttggctggaatgaaaagagatcaagtcctttcagagaggagatcacagtcaaa
gcaccaaaatttctccaaaagcagactgaggcccatgtggccacagttcccagagggttt
gatttcttctcaactgtgagcgtcccatccaacaccagctcagctgtcagcagaagcatt
aaatgcaaagaagaggaagctttccttgggatatttgatggtatattttaa
DBGET
integrated database retrieval system
