Pungitius pungitius (ninespine stickleback): 119210294
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Entry
119210294 CDS
T07626
Symbol
pcdh11
Name
(RefSeq) protocadherin-11 X-linked isoform X1
KO
K16498
protocadherin delta 1
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
119210294 (pcdh11)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ppug01009
]
119210294 (pcdh11)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ppug04515
]
119210294 (pcdh11)
Protein phosphatases and associated proteins [BR:
ppug01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
119210294 (pcdh11)
Cell adhesion molecules [BR:
ppug04515
]
Cadherins
Protocadherins
119210294 (pcdh11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Ig_CLSTN
Cadherin_FAT4_N
Cadherin_CELSR2_9th
Ig_Cad99C_N
TMEM154
DUF6249
Motif
Other DBs
NCBI-GeneID:
119210294
NCBI-ProteinID:
XP_037316019
LinkDB
All DBs
Position
2:21771237..21889694
Genome browser
AA seq
1267 aa
AA seq
DB search
MDLASQAHVLVVLLACVALLCQAQERDYTVKEEQPENVRIGNLRKDLDLNLDPNIRLSSP
LQFKPVYKTGDVPLVRVEANTGEIFTTNHRIDREKLCSGVFAEKRCYYEIEVAVLPDEIF
RLVKIRFLIEDVNDNAPLFQSTVINISIPENTAINTRYPVPSALDPDVGINGIQHYELVK
SVSEFGLDIIETPEGDKWPQLIVQQNLDREQKDTFVMKIKVEDGGNPPKSSTAILQVTIS
DVNDNRPVFKDSEQEVTVPENAPMGTSVAQLHASDADLGSNALIHFAFSNQVSASTKRHF
VIDSTTGLITVKQPLDREVTPVHKLIVLASDGSSTPSRATVIVNVTDVNDNVPSIDTRYI
INLVNGTVLLSENAPLNTKIALITVTDKDADLYGKVACYTDHDVPFRLKPVFNDQFLLET
AAQLDYETTREYAIKIVASDRGTPPLNTSAMVLIKIKDENDNSPIFPQPEIQLSIPENND
PSTQLIKISATDADSGHNAEIIYTLGPDAPDGFNIDRRSGILSVGKRLDREKQERYSFAI
IARDNGSTSLQSNVTVRLIVQDLNDNSPAFTHPEYNFYVPENLPLYGTVGLITVTDADAG
DNAIITLSVLNGKDNFIIDPQTGVIKPNITFDREQQSSYTFMVKAVDAGQPPSSSYAKVT
INVVDVNDNRPVFVIPSSNYSYDLVRTTTNPGAVVTRVFAIDNDTGMNAELQYSIISSII
ITSRVSPRGLFAIDKTTGNITLQEKIVTADQGLHRLIVKVKDLGQPESLHAIALIHLFVN
DTVSNATFIQEQLRKSMETPLDRNIGDSEVTPQANGYVIVVIAIIAGTMTVILVIFVTAL
VRCRQTPRHKVVQKGKQSGEWVSPNQDNRQIKKKKKRKKRSPKSLLLNFVTIDESKPDDP
THEHVNGTLDLPVELEEQTMGKYNWATTPTTFKPDSPDLAKHYKSASPQPTFQIKPETPV
APKKHHVIQELPLDNTFVVGCDSLSKCSSTSSDPYSVSECSCQGGFKTAGQITTRQNLSP
TPEQSFSSPPPICPHKEACQLGKITSMNTQRRVTFHLPDGSQESCSDSGLGDPEPSSTAS
TTQPLPLSFPQDEYYEQTSPNSRTEGDGNSDPESTIEVNLQKALAEASETCTQECLILGH
SDSCWMPPALAQFQGPGSNSPTSTPIATAISGTMPSFGFQQSCARGAKVNMVSMGVMDGR
HTLGRSVPKKDELDKGINRPQFYNTLDRHCSKKEDPFKVIPLASFSSPGQQTPTGGGSSS
FLHEHQL
NT seq
3804 nt
NT seq
+upstream
nt +downstream
nt
atggacttagcaagtcaggcccatgtgctggtggtcttgctggcctgtgtggccttgcta
tgtcaggcccaggagagggactacacggtgaaggaggagcagccggagaacgtccgcatc
gggaacctgcgcaaggacctggacctcaaccttgaccccaacatcaggttatcctcgccg
ctgcagttcaagcctgtgtacaagacaggtgacgtgcctttggtgagggtggaggccaac
acgggggagatctttaccaccaatcacagaatcgaccgggagaagctgtgctcaggggtc
ttcgctgagaaacgctgctactatgagatcgaggtggccgttctgccggatgagatcttc
cgcttggtaaagatccgcttcctgatcgaggatgtaaacgacaacgctccccttttccag
tcaactgtaataaacatctccatcccggagaacaccgccatcaacactcgatacccagtg
ccctcagcgcttgaccctgatgtgggaatcaatgggatccaacattatgaactggtcaag
agtgtcagcgagtttggcttagacatcatagagactcctgaaggggacaagtggccacag
cttattgttcagcagaacctggatcgcgagcagaaggacacctttgtgatgaagataaag
gttgaggatggtggcaaccctcccaagtccagcactgccatcctccaagtaaccatctcc
gatgtcaatgacaaccgccccgtcttcaaggacagtgagcaggaggtcacggtgccagag
aatgccccgatggggacatctgttgctcagcttcacgcctcggacgcagatctgggttcc
aacgcactgatccactttgccttcagcaaccaggtctctgcgtccaccaaacgtcacttt
gtcattgacagcactactggactgatcactgtgaagcagccactggacagggaggtaact
cctgttcacaaactcattgtccttgccagtgatggcagctccaccccctccagagccaca
gtgattgttaatgtaacagacgttaatgacaatgttccctccatagacactcgctacatt
atcaacctggttaatgggacggttctgctgtcggagaatgctcctctcaacaccaaaata
gctctcatcactgtaactgacaaggatgcagacctgtatggtaaagtagcttgctacact
gaccatgatgttccttttcgattgaagcctgtctttaacgaccaatttttactagaaaca
gctgcccagttagattatgagacgactcgagaatatgcaattaagatagtggcctcggat
agggggactcctcctttgaacacttcagctatggttttaattaaaatcaaggatgagaac
gacaattcacccatcttcccccagccggaaatccaactttccataccggagaacaatgac
ccctctacccagttaataaaaatcagcgccactgacgcagacagcggacataatgcggag
attatttatactcttggccctgatgcacctgacgggtttaacatagacagacggtcagga
attctctctgttggcaaacgactggacagagagaagcaggagaggtactcattcgctatc
atagcaagggacaatggctccacgtcccttcagagcaatgtcactgtcaggctaatcgtc
caggaccttaatgacaacagcccagctttcacacaccctgagtacaacttttatgtaccc
gagaacctgcctctctatgggactgtgggcttaatcacagtgacggacgcagatgcggga
gataatgcaattataaccctgtctgttttaaacgggaaagataattttatcatcgacccc
caaaccggtgtgatcaaacccaacatcacctttgatagggagcagcaaagctcctacaca
tttatggttaaggccgttgatgcagggcaacctccaagctcatcctacgccaaggtcaca
atcaatgtcgtcgatgtcaacgacaatcgcccagtgttcgtcatcccatcctccaattac
tcatatgacctagtgcgaaccactaccaaccctggggctgtggtcaccagagtgtttgcc
attgacaatgacacaggtatgaatgctgagctgcagtacagcattatcagcagcatcatc
atcacatctagggtctcccctcgaggtctctttgccatcgacaagacgacgggtaacata
acactgcaggagaaaattgtgacggctgatcaagggctgcataggctgatagtcaaagtc
aaagatctgggtcagcctgagtcattacatgccatcgcccttatccacttgtttgtcaat
gacactgtgtcaaatgcaaccttcatccaagagcagctgcgaaaaagtatggagacacct
ttggatcgtaacataggggacagtgaggtaaccccccaagccaatggatatgtgattgtt
gtcatagcaatcatagccgggaccatgactgtcatcttggtgatatttgtaactgccttg
gtgcgctgccgacagacaccaagacacaaagttgtacagaagggcaagcagagtggcgag
tgggtgtcacccaaccaagacaaccgtcagatcaagaaaaagaagaagagaaagaagcga
tcccccaagagcctcctcttgaactttgtgaccatagatgaatcgaagcctgacgacccc
acccatgagcatgttaatggaacacttgatctccctgtggagttagaggagcaaaccatg
gggaagtacaactgggccacaacgcccaccaccttcaaacctgacagcccagatttagcc
aagcattacaagtccgcgtcccctcagcccacatttcaaatcaaacccgagactccagtg
gccccaaagaaacaccatgtgatccaggaactccccttggacaacacgttcgtggtgggc
tgcgactcactctccaagtgctcatcgactagctccgacccatacagtgtctcagagtgc
agctgtcaggggggattcaagactgcggggcaaatcaccacccgacagaacctgagcccg
acaccggagcagtcgttcagctcaccgccccccatttgtcctcataaggaggcctgtcaa
cttggcaagataacctctatgaatacccagcgccgcgtgacgttccatcttccggacggc
tcacaggagagttgcagtgacagcgggctcggagacccagagccaagcagcactgccagc
accacccaacctctccccctgagtttcccccaggatgagtactatgagcaaacatcccca
aacagccgcaccgagggagatggaaactcagaccctgaatccaccatcgaggtgaaccta
cagaaagccttggccgaggcctctgagacctgtacccaggagtgtctgatactgggccac
tctgacagctgctggatgcccccagccctggcccagttccagggccctggcagcaacagc
cccacctccacccctatcgccaccgccatcagcggcacaatgccatctttcggcttccag
cagagctgcgcccggggagccaaagtcaacatggtcagcatgggggtcatggacggccgc
cataccctgggcaggtccgtgcccaaaaaagatgaactggacaaagggatcaatcggccg
cagttctacaacaccttagatagacactgcagcaagaaagaggaccccttcaaggtcatc
cccctggcgagcttctcctctcctgggcagcagacgcccactggagggggcagcagctcc
ttcttacacgagcaccagttgtaa
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integrated database retrieval system
